Hb_003025_030

Information

Type -
Description -
Location Contig3025: 20254-24365
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09340g
description hypothetical protein
nr
ID XP_012070199.1
description PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID E0CTY1
description Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial OS=Vitis vinifera GN=GATA PE=3 SV=1
trembl
ID A0A067L6U6
description Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial OS=Jatropha curcas GN=GATA PE=3 SV=1
Gene Ontology
ID GO:0005739
description glutamyl-trna amidotransferase subunit chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31898: 21251-21370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_030 0.0 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_000465_150 0.0976554062 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
3 Hb_000804_020 0.1169571355 - - PREDICTED: aconitate hydratase, cytoplasmic [Jatropha curcas]
4 Hb_124315_010 0.1293085205 - - PREDICTED: uncharacterized protein LOC105650413 [Jatropha curcas]
5 Hb_002281_020 0.1303017804 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
6 Hb_001564_070 0.1306188822 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
7 Hb_007416_110 0.1344011434 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
8 Hb_010872_050 0.1362155226 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
9 Hb_027760_060 0.137240722 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
10 Hb_005686_130 0.1375529503 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
11 Hb_000365_200 0.137793286 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
12 Hb_001754_050 0.1397201058 - - protein arginine n-methyltransferase, putative [Ricinus communis]
13 Hb_009296_020 0.140240293 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
14 Hb_002486_080 0.1411460561 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
15 Hb_004883_020 0.1416094425 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
16 Hb_000500_220 0.1416587765 - - PREDICTED: intersectin-1 [Jatropha curcas]
17 Hb_001504_060 0.1427845838 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
18 Hb_005854_040 0.1435531743 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005015_110 0.1444161169 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
20 Hb_000258_090 0.1445496823 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003025_030 Hb_003025_030 Hb_000465_150 Hb_000465_150 Hb_003025_030--Hb_000465_150 Hb_000804_020 Hb_000804_020 Hb_003025_030--Hb_000804_020 Hb_124315_010 Hb_124315_010 Hb_003025_030--Hb_124315_010 Hb_002281_020 Hb_002281_020 Hb_003025_030--Hb_002281_020 Hb_001564_070 Hb_001564_070 Hb_003025_030--Hb_001564_070 Hb_007416_110 Hb_007416_110 Hb_003025_030--Hb_007416_110 Hb_000465_150--Hb_007416_110 Hb_005015_110 Hb_005015_110 Hb_000465_150--Hb_005015_110 Hb_002486_080 Hb_002486_080 Hb_000465_150--Hb_002486_080 Hb_002232_430 Hb_002232_430 Hb_000465_150--Hb_002232_430 Hb_001493_150 Hb_001493_150 Hb_000465_150--Hb_001493_150 Hb_000340_220 Hb_000340_220 Hb_000804_020--Hb_000340_220 Hb_000804_020--Hb_007416_110 Hb_000804_020--Hb_001564_070 Hb_000804_020--Hb_000465_150 Hb_009296_020 Hb_009296_020 Hb_000804_020--Hb_009296_020 Hb_007229_050 Hb_007229_050 Hb_124315_010--Hb_007229_050 Hb_006185_030 Hb_006185_030 Hb_124315_010--Hb_006185_030 Hb_000172_280 Hb_000172_280 Hb_124315_010--Hb_000172_280 Hb_004883_020 Hb_004883_020 Hb_124315_010--Hb_004883_020 Hb_000683_050 Hb_000683_050 Hb_124315_010--Hb_000683_050 Hb_000861_100 Hb_000861_100 Hb_124315_010--Hb_000861_100 Hb_003440_020 Hb_003440_020 Hb_002281_020--Hb_003440_020 Hb_008375_010 Hb_008375_010 Hb_002281_020--Hb_008375_010 Hb_002281_020--Hb_002486_080 Hb_002281_020--Hb_007416_110 Hb_000585_110 Hb_000585_110 Hb_002281_020--Hb_000585_110 Hb_001301_280 Hb_001301_280 Hb_002281_020--Hb_001301_280 Hb_001504_060 Hb_001504_060 Hb_001564_070--Hb_001504_060 Hb_000125_180 Hb_000125_180 Hb_001564_070--Hb_000125_180 Hb_000922_260 Hb_000922_260 Hb_001564_070--Hb_000922_260 Hb_005854_040 Hb_005854_040 Hb_001564_070--Hb_005854_040 Hb_004291_040 Hb_004291_040 Hb_001564_070--Hb_004291_040 Hb_012325_010 Hb_012325_010 Hb_001564_070--Hb_012325_010 Hb_000510_170 Hb_000510_170 Hb_007416_110--Hb_000510_170 Hb_007416_110--Hb_003440_020 Hb_007416_110--Hb_002486_080 Hb_000638_130 Hb_000638_130 Hb_007416_110--Hb_000638_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0525153 0.478259 1.01099 0.753013 0.0877802 0.229029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.209287 0.235221 0.398305 1.17304 0.788574

CAGE analysis