Hb_003025_040

Information

Type -
Description -
Location Contig3025: 28838-32974
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05560g
description POPTRDRAFT_569847; hypothetical protein
nr
ID XP_012070201.1
description PREDICTED: elongin-A [Jatropha curcas]
swissprot
ID O59671
description Elongin-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof4 PE=1 SV=3
trembl
ID A0A067L5N6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03941 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor b polypeptide 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31900: 28921-32950 , PASA_asmbl_31901: 30207-30445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_040 0.0 - - PREDICTED: elongin-A [Jatropha curcas]
2 Hb_017413_010 0.0840939665 - - -
3 Hb_000789_230 0.0870071686 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
4 Hb_087749_010 0.0872448335 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
5 Hb_019762_020 0.0876791955 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
6 Hb_000373_120 0.0974390643 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
7 Hb_006846_060 0.1022676134 - - inositol hexaphosphate kinase, putative [Ricinus communis]
8 Hb_033153_060 0.1029274363 - - Transcription elongation factor, putative [Ricinus communis]
9 Hb_000808_190 0.1033051366 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
10 Hb_006816_210 0.1036169489 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
11 Hb_002111_040 0.1038241552 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
12 Hb_001421_060 0.1047947006 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
13 Hb_002183_060 0.1049043637 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
14 Hb_004102_070 0.1050632399 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
15 Hb_000431_070 0.106126571 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
16 Hb_006907_130 0.1074417365 - - unnamed protein product [Coffea canephora]
17 Hb_002518_210 0.1085405085 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
18 Hb_001006_020 0.1085943451 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
19 Hb_001437_060 0.1088089891 - - PREDICTED: uncharacterized protein LOC105628058 [Jatropha curcas]
20 Hb_001386_040 0.1090691634 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]

Gene co-expression network

sample Hb_003025_040 Hb_003025_040 Hb_017413_010 Hb_017413_010 Hb_003025_040--Hb_017413_010 Hb_000789_230 Hb_000789_230 Hb_003025_040--Hb_000789_230 Hb_087749_010 Hb_087749_010 Hb_003025_040--Hb_087749_010 Hb_019762_020 Hb_019762_020 Hb_003025_040--Hb_019762_020 Hb_000373_120 Hb_000373_120 Hb_003025_040--Hb_000373_120 Hb_006846_060 Hb_006846_060 Hb_003025_040--Hb_006846_060 Hb_017413_010--Hb_000789_230 Hb_000331_450 Hb_000331_450 Hb_017413_010--Hb_000331_450 Hb_005278_020 Hb_005278_020 Hb_017413_010--Hb_005278_020 Hb_017491_060 Hb_017491_060 Hb_017413_010--Hb_017491_060 Hb_017413_010--Hb_006846_060 Hb_017413_010--Hb_000373_120 Hb_000016_080 Hb_000016_080 Hb_000789_230--Hb_000016_080 Hb_002110_200 Hb_002110_200 Hb_000789_230--Hb_002110_200 Hb_007065_010 Hb_007065_010 Hb_000789_230--Hb_007065_010 Hb_000254_050 Hb_000254_050 Hb_000789_230--Hb_000254_050 Hb_005463_140 Hb_005463_140 Hb_000789_230--Hb_005463_140 Hb_000431_070 Hb_000431_070 Hb_087749_010--Hb_000431_070 Hb_002613_020 Hb_002613_020 Hb_087749_010--Hb_002613_020 Hb_002798_020 Hb_002798_020 Hb_087749_010--Hb_002798_020 Hb_087749_010--Hb_007065_010 Hb_033153_060 Hb_033153_060 Hb_087749_010--Hb_033153_060 Hb_002411_040 Hb_002411_040 Hb_019762_020--Hb_002411_040 Hb_026314_020 Hb_026314_020 Hb_019762_020--Hb_026314_020 Hb_019762_020--Hb_017413_010 Hb_019762_020--Hb_005278_020 Hb_004784_020 Hb_004784_020 Hb_019762_020--Hb_004784_020 Hb_001421_060 Hb_001421_060 Hb_000373_120--Hb_001421_060 Hb_000270_370 Hb_000270_370 Hb_000373_120--Hb_000270_370 Hb_000479_090 Hb_000479_090 Hb_000373_120--Hb_000479_090 Hb_000059_370 Hb_000059_370 Hb_000373_120--Hb_000059_370 Hb_010068_020 Hb_010068_020 Hb_000373_120--Hb_010068_020 Hb_004375_100 Hb_004375_100 Hb_000373_120--Hb_004375_100 Hb_012799_160 Hb_012799_160 Hb_006846_060--Hb_012799_160 Hb_001584_190 Hb_001584_190 Hb_006846_060--Hb_001584_190 Hb_003964_100 Hb_003964_100 Hb_006846_060--Hb_003964_100 Hb_006816_210 Hb_006816_210 Hb_006846_060--Hb_006816_210 Hb_006846_060--Hb_000270_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9155 4.6213 12.0956 30.8305 16.3789 21.9645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.5998 46.9246 23.4973 23.7249 25.131

CAGE analysis