Hb_003025_050

Information

Type -
Description -
Location Contig3025: 33340-43514
Sequence    

Annotation

kegg
ID pop:POPTR_0016s09070g
description POPTRDRAFT_735490; Citrate synthase family protein
nr
ID XP_012084988.1
description PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
swissprot
ID P49299
description Citrate synthase, glyoxysomal OS=Cucurbita maxima PE=1 SV=1
trembl
ID A0A067K586
description Citrate synthase OS=Jatropha curcas GN=JCGZ_22095 PE=3 SV=1
Gene Ontology
ID GO:0046912
description citrate glyoxysomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31902: 33296-43277 , PASA_asmbl_31903: 42322-42613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_050 0.0 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
2 Hb_002666_080 0.1150482866 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002890_100 0.1174627714 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
4 Hb_003780_090 0.1211767478 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
5 Hb_118840_050 0.1262714649 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
6 Hb_005333_030 0.1313810006 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
7 Hb_000215_190 0.131975609 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
8 Hb_000158_130 0.1324965249 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
9 Hb_164458_010 0.1353475548 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_004017_040 0.1358904855 - - kinetochore protein nuf2, putative [Ricinus communis]
11 Hb_006683_040 0.1368279712 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_002374_320 0.1369620932 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
13 Hb_018301_010 0.1381145925 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
14 Hb_000034_160 0.139810545 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
15 Hb_000932_070 0.1399750493 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
16 Hb_167381_020 0.1401683753 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
17 Hb_000264_080 0.1403010542 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
18 Hb_007982_050 0.141413154 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
19 Hb_143960_010 0.1427105951 - - -
20 Hb_000261_290 0.14400043 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]

Gene co-expression network

sample Hb_003025_050 Hb_003025_050 Hb_002666_080 Hb_002666_080 Hb_003025_050--Hb_002666_080 Hb_002890_100 Hb_002890_100 Hb_003025_050--Hb_002890_100 Hb_003780_090 Hb_003780_090 Hb_003025_050--Hb_003780_090 Hb_118840_050 Hb_118840_050 Hb_003025_050--Hb_118840_050 Hb_005333_030 Hb_005333_030 Hb_003025_050--Hb_005333_030 Hb_000215_190 Hb_000215_190 Hb_003025_050--Hb_000215_190 Hb_002081_120 Hb_002081_120 Hb_002666_080--Hb_002081_120 Hb_002666_080--Hb_002890_100 Hb_000264_080 Hb_000264_080 Hb_002666_080--Hb_000264_080 Hb_056987_010 Hb_056987_010 Hb_002666_080--Hb_056987_010 Hb_002666_080--Hb_118840_050 Hb_000336_110 Hb_000336_110 Hb_002666_080--Hb_000336_110 Hb_002890_100--Hb_118840_050 Hb_000184_150 Hb_000184_150 Hb_002890_100--Hb_000184_150 Hb_029695_020 Hb_029695_020 Hb_002890_100--Hb_029695_020 Hb_001047_200 Hb_001047_200 Hb_002890_100--Hb_001047_200 Hb_000917_160 Hb_000917_160 Hb_002890_100--Hb_000917_160 Hb_002157_050 Hb_002157_050 Hb_003780_090--Hb_002157_050 Hb_003780_090--Hb_002890_100 Hb_003780_090--Hb_118840_050 Hb_003780_090--Hb_029695_020 Hb_003780_090--Hb_001047_200 Hb_000010_360 Hb_000010_360 Hb_003780_090--Hb_000010_360 Hb_118840_050--Hb_000917_160 Hb_000191_130 Hb_000191_130 Hb_118840_050--Hb_000191_130 Hb_000062_470 Hb_000062_470 Hb_118840_050--Hb_000062_470 Hb_000577_030 Hb_000577_030 Hb_118840_050--Hb_000577_030 Hb_000230_430 Hb_000230_430 Hb_118840_050--Hb_000230_430 Hb_118840_050--Hb_001047_200 Hb_005333_030--Hb_002666_080 Hb_003710_040 Hb_003710_040 Hb_005333_030--Hb_003710_040 Hb_167381_020 Hb_167381_020 Hb_005333_030--Hb_167381_020 Hb_004017_040 Hb_004017_040 Hb_005333_030--Hb_004017_040 Hb_005333_030--Hb_118840_050 Hb_000261_290 Hb_000261_290 Hb_005333_030--Hb_000261_290 Hb_001492_010 Hb_001492_010 Hb_000215_190--Hb_001492_010 Hb_001454_320 Hb_001454_320 Hb_000215_190--Hb_001454_320 Hb_000836_270 Hb_000836_270 Hb_000215_190--Hb_000836_270 Hb_000158_130 Hb_000158_130 Hb_000215_190--Hb_000158_130 Hb_003124_130 Hb_003124_130 Hb_000215_190--Hb_003124_130 Hb_000645_120 Hb_000645_120 Hb_000215_190--Hb_000645_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9464 20.2224 10.3504 8.18914 16.5417 14.5922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.28078 3.90796 3.80646 14.5503 1.17414

CAGE analysis