Hb_003025_070

Information

Type -
Description -
Location Contig3025: 76468-80073
Sequence    

Annotation

kegg
ID mdm:103419743
description uncharacterized LOC103419743
nr
ID XP_008356060.1
description PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
swissprot
ID -
description -
trembl
ID Q2QQV8
description Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g29700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_070 0.0 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
2 Hb_021419_050 0.1583749876 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]
3 Hb_012399_010 0.1962695855 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_008835_010 0.1985498174 - - PREDICTED: uncharacterized protein LOC105851721 [Cicer arietinum]
5 Hb_150851_010 0.2009212917 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_004680_030 0.2361341327 - - PREDICTED: uncharacterized protein LOC105795864 [Gossypium raimondii]
7 Hb_108886_010 0.2504225352 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000061_280 0.2611599881 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
9 Hb_000042_140 0.2974150449 - - hypothetical protein POPTR_0001s41640g, partial [Populus trichocarpa]
10 Hb_001976_080 0.3026824398 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
11 Hb_001462_020 0.3037906934 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
12 Hb_071586_010 0.3045060693 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
13 Hb_000904_100 0.3100741076 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
14 Hb_001545_190 0.3112108912 - - hypothetical protein VITISV_012031 [Vitis vinifera]
15 Hb_096671_010 0.3114481612 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
16 Hb_003760_040 0.3158292998 - - organic anion transporter, putative [Ricinus communis]
17 Hb_001338_060 0.3171368846 - - -
18 Hb_000252_030 0.3216218707 - - Heme-binding protein, putative [Ricinus communis]
19 Hb_000120_690 0.3257785932 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
20 Hb_005483_010 0.3376104791 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]

Gene co-expression network

sample Hb_003025_070 Hb_003025_070 Hb_021419_050 Hb_021419_050 Hb_003025_070--Hb_021419_050 Hb_012399_010 Hb_012399_010 Hb_003025_070--Hb_012399_010 Hb_008835_010 Hb_008835_010 Hb_003025_070--Hb_008835_010 Hb_150851_010 Hb_150851_010 Hb_003025_070--Hb_150851_010 Hb_004680_030 Hb_004680_030 Hb_003025_070--Hb_004680_030 Hb_108886_010 Hb_108886_010 Hb_003025_070--Hb_108886_010 Hb_021419_050--Hb_008835_010 Hb_021419_050--Hb_150851_010 Hb_021419_050--Hb_012399_010 Hb_000061_280 Hb_000061_280 Hb_021419_050--Hb_000061_280 Hb_021419_050--Hb_004680_030 Hb_012399_010--Hb_008835_010 Hb_012399_010--Hb_150851_010 Hb_012399_010--Hb_004680_030 Hb_012399_010--Hb_000061_280 Hb_008835_010--Hb_150851_010 Hb_008835_010--Hb_000061_280 Hb_008835_010--Hb_004680_030 Hb_001545_190 Hb_001545_190 Hb_008835_010--Hb_001545_190 Hb_150851_010--Hb_000061_280 Hb_150851_010--Hb_004680_030 Hb_150851_010--Hb_001545_190 Hb_000038_190 Hb_000038_190 Hb_004680_030--Hb_000038_190 Hb_000046_150 Hb_000046_150 Hb_004680_030--Hb_000046_150 Hb_000047_120 Hb_000047_120 Hb_004680_030--Hb_000047_120 Hb_001338_060 Hb_001338_060 Hb_108886_010--Hb_001338_060 Hb_005045_040 Hb_005045_040 Hb_108886_010--Hb_005045_040 Hb_000252_030 Hb_000252_030 Hb_108886_010--Hb_000252_030 Hb_003777_010 Hb_003777_010 Hb_108886_010--Hb_003777_010 Hb_108886_010--Hb_021419_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.157792 0 0 0 0.0344166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.623114 0.0287655 0

CAGE analysis