Hb_003025_090

Information

Type -
Description -
Location Contig3025: 101663-102657
Sequence    

Annotation

kegg
ID tcc:TCM_045227
description Zinc finger, CCHC-type-like protein
nr
ID KJB13962.1
description hypothetical protein B456_002G103400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2M937
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G103400 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc cchc-type-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31907: 102043-102430 , PASA_asmbl_31908: 103408-111309 , PASA_asmbl_31909: 103412-111326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_090 0.0 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
2 Hb_001913_010 0.0887420372 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
3 Hb_002399_010 0.0944702842 - - conserved hypothetical protein [Ricinus communis]
4 Hb_178968_110 0.0948350236 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
5 Hb_000179_210 0.0961099766 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
6 Hb_003929_260 0.0963943265 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003297_030 0.1012728621 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
8 Hb_000123_120 0.1041711884 - - actin depolymerizing factor 4 [Hevea brasiliensis]
9 Hb_005883_030 0.1048960369 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
10 Hb_171900_080 0.1049588586 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_008453_090 0.108099339 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
12 Hb_010795_010 0.1087083077 - - protein with unknown function [Ricinus communis]
13 Hb_010863_080 0.1093062508 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
14 Hb_000417_180 0.1097246826 - - 60S ribosomal protein L11, putative [Ricinus communis]
15 Hb_002890_280 0.10998221 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
16 Hb_000457_150 0.1105327785 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
17 Hb_000175_450 0.110629089 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
18 Hb_006501_040 0.1116716851 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
19 Hb_003018_200 0.1117138096 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
20 Hb_000221_220 0.1130432807 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]

Gene co-expression network

sample Hb_003025_090 Hb_003025_090 Hb_001913_010 Hb_001913_010 Hb_003025_090--Hb_001913_010 Hb_002399_010 Hb_002399_010 Hb_003025_090--Hb_002399_010 Hb_178968_110 Hb_178968_110 Hb_003025_090--Hb_178968_110 Hb_000179_210 Hb_000179_210 Hb_003025_090--Hb_000179_210 Hb_003929_260 Hb_003929_260 Hb_003025_090--Hb_003929_260 Hb_003297_030 Hb_003297_030 Hb_003025_090--Hb_003297_030 Hb_001511_020 Hb_001511_020 Hb_001913_010--Hb_001511_020 Hb_001913_010--Hb_002399_010 Hb_001274_030 Hb_001274_030 Hb_001913_010--Hb_001274_030 Hb_004109_200 Hb_004109_200 Hb_001913_010--Hb_004109_200 Hb_010381_070 Hb_010381_070 Hb_001913_010--Hb_010381_070 Hb_000162_090 Hb_000162_090 Hb_001913_010--Hb_000162_090 Hb_001073_070 Hb_001073_070 Hb_002399_010--Hb_001073_070 Hb_000554_020 Hb_000554_020 Hb_002399_010--Hb_000554_020 Hb_002375_020 Hb_002375_020 Hb_002399_010--Hb_002375_020 Hb_004324_370 Hb_004324_370 Hb_002399_010--Hb_004324_370 Hb_003266_130 Hb_003266_130 Hb_178968_110--Hb_003266_130 Hb_005532_060 Hb_005532_060 Hb_178968_110--Hb_005532_060 Hb_000457_150 Hb_000457_150 Hb_178968_110--Hb_000457_150 Hb_178968_110--Hb_000179_210 Hb_000614_230 Hb_000614_230 Hb_178968_110--Hb_000614_230 Hb_010172_050 Hb_010172_050 Hb_178968_110--Hb_010172_050 Hb_006501_040 Hb_006501_040 Hb_000179_210--Hb_006501_040 Hb_001085_170 Hb_001085_170 Hb_000179_210--Hb_001085_170 Hb_000059_220 Hb_000059_220 Hb_000179_210--Hb_000059_220 Hb_000179_210--Hb_000457_150 Hb_000179_210--Hb_003297_030 Hb_002150_080 Hb_002150_080 Hb_003929_260--Hb_002150_080 Hb_003929_260--Hb_002399_010 Hb_007575_060 Hb_007575_060 Hb_003929_260--Hb_007575_060 Hb_000042_030 Hb_000042_030 Hb_003929_260--Hb_000042_030 Hb_003929_260--Hb_001073_070 Hb_010863_080 Hb_010863_080 Hb_003297_030--Hb_010863_080 Hb_003609_040 Hb_003609_040 Hb_003297_030--Hb_003609_040 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_098993_010 Hb_098993_010 Hb_003297_030--Hb_098993_010 Hb_000030_010 Hb_000030_010 Hb_003297_030--Hb_000030_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0433 5.10558 2.76387 1.19 8.91302 8.0641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.19101 11.3106 12.7625 1.9254 1.78341

CAGE analysis