Hb_003025_100

Information

Type -
Description -
Location Contig3025: 103356-110952
Sequence    

Annotation

kegg
ID sly:543849
description PP5, LePP5; type 5 serine/threonine phosphatase 55 kDa isoform (EC:3.1.3.16)
nr
ID XP_012084998.1
description PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
swissprot
ID Q84XU2
description Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1
trembl
ID A0A061DJZ6
description Phosphatase 5.2 isoform 2 OS=Theobroma cacao GN=TCM_001824 PE=4 SV=1
Gene Ontology
ID GO:0005829
description serine threonine-protein phosphatase 5 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31908: 103408-111309 , PASA_asmbl_31909: 103412-111326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_100 0.0 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
2 Hb_001818_100 0.0576774144 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
3 Hb_000260_350 0.0639817229 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012498_010 0.0656770487 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
5 Hb_091296_010 0.0657188925 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_000116_270 0.0664580272 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
7 Hb_006478_020 0.0677148992 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
8 Hb_005291_050 0.0683595447 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
9 Hb_149985_010 0.0708095348 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
10 Hb_004109_080 0.0711087802 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
11 Hb_001004_070 0.0722410395 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001936_130 0.0724974341 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
13 Hb_000574_450 0.073009381 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
14 Hb_001629_030 0.0735530729 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
15 Hb_000345_310 0.0753864044 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]
16 Hb_000349_260 0.0756998318 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
17 Hb_007416_090 0.075873516 - - UDP-sugar transporter, putative [Ricinus communis]
18 Hb_004109_220 0.0764417284 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
19 Hb_000256_150 0.0777155423 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
20 Hb_000288_030 0.0777281921 - - PREDICTED: syntaxin-32 [Jatropha curcas]

Gene co-expression network

sample Hb_003025_100 Hb_003025_100 Hb_001818_100 Hb_001818_100 Hb_003025_100--Hb_001818_100 Hb_000260_350 Hb_000260_350 Hb_003025_100--Hb_000260_350 Hb_012498_010 Hb_012498_010 Hb_003025_100--Hb_012498_010 Hb_091296_010 Hb_091296_010 Hb_003025_100--Hb_091296_010 Hb_000116_270 Hb_000116_270 Hb_003025_100--Hb_000116_270 Hb_006478_020 Hb_006478_020 Hb_003025_100--Hb_006478_020 Hb_001629_030 Hb_001629_030 Hb_001818_100--Hb_001629_030 Hb_004052_170 Hb_004052_170 Hb_001818_100--Hb_004052_170 Hb_004108_160 Hb_004108_160 Hb_001818_100--Hb_004108_160 Hb_005601_040 Hb_005601_040 Hb_001818_100--Hb_005601_040 Hb_000768_200 Hb_000768_200 Hb_001818_100--Hb_000768_200 Hb_001511_060 Hb_001511_060 Hb_000260_350--Hb_001511_060 Hb_000349_260 Hb_000349_260 Hb_000260_350--Hb_000349_260 Hb_004990_010 Hb_004990_010 Hb_000260_350--Hb_004990_010 Hb_093458_040 Hb_093458_040 Hb_000260_350--Hb_093458_040 Hb_005054_110 Hb_005054_110 Hb_000260_350--Hb_005054_110 Hb_168978_010 Hb_168978_010 Hb_000260_350--Hb_168978_010 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_005291_050 Hb_005291_050 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_010142_020 Hb_010142_020 Hb_012498_010--Hb_010142_020 Hb_001936_130 Hb_001936_130 Hb_091296_010--Hb_001936_130 Hb_004159_020 Hb_004159_020 Hb_091296_010--Hb_004159_020 Hb_091296_010--Hb_004108_160 Hb_091296_010--Hb_001818_100 Hb_000205_140 Hb_000205_140 Hb_091296_010--Hb_000205_140 Hb_001159_130 Hb_001159_130 Hb_000116_270--Hb_001159_130 Hb_001016_120 Hb_001016_120 Hb_000116_270--Hb_001016_120 Hb_000200_020 Hb_000200_020 Hb_000116_270--Hb_000200_020 Hb_084646_010 Hb_084646_010 Hb_000116_270--Hb_084646_010 Hb_000116_270--Hb_006478_020 Hb_000477_060 Hb_000477_060 Hb_000116_270--Hb_000477_060 Hb_000599_250 Hb_000599_250 Hb_006478_020--Hb_000599_250 Hb_000172_290 Hb_000172_290 Hb_006478_020--Hb_000172_290 Hb_001971_010 Hb_001971_010 Hb_006478_020--Hb_001971_010 Hb_001366_180 Hb_001366_180 Hb_006478_020--Hb_001366_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4935 9.88554 14.4598 24.5705 11.1312 16.0269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4489 17.9184 21.752 15.9653 20.7063

CAGE analysis