Hb_003025_110

Information

Type -
Description -
Location Contig3025: 111552-127945
Sequence    

Annotation

kegg
ID tcc:TCM_001830
description Integrin-linked protein kinase family isoform 1
nr
ID XP_012066539.1
description PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID A0A067LDV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00174 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase ht1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31910: 111723-115153 , PASA_asmbl_31911: 126071-126208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_110 0.0 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
2 Hb_004410_030 0.0553795674 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000011_200 0.0576663221 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
4 Hb_001946_010 0.0582116018 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_007575_050 0.0584439466 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
6 Hb_011930_160 0.0600583493 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
7 Hb_000617_180 0.060784536 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
8 Hb_000193_190 0.061623856 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
9 Hb_007576_110 0.0626446342 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
10 Hb_007317_110 0.0626741919 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
11 Hb_004619_030 0.062834741 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
12 Hb_003438_050 0.0632538457 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
13 Hb_002518_280 0.0637202882 - - phosphate transporter [Manihot esculenta]
14 Hb_000225_040 0.0643686816 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
15 Hb_002271_030 0.0654082112 - - Vacuolar protein sorting protein, putative [Ricinus communis]
16 Hb_001141_020 0.0661735425 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
17 Hb_009467_060 0.0662795634 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
18 Hb_000347_070 0.0663687082 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000879_200 0.0671865433 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
20 Hb_000638_120 0.0672555462 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_003025_110 Hb_003025_110 Hb_004410_030 Hb_004410_030 Hb_003025_110--Hb_004410_030 Hb_000011_200 Hb_000011_200 Hb_003025_110--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_003025_110--Hb_001946_010 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_011930_160 Hb_011930_160 Hb_003025_110--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_001357_250 Hb_001357_250 Hb_004410_030--Hb_001357_250 Hb_004410_030--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_004410_030--Hb_000225_040 Hb_002271_030 Hb_002271_030 Hb_004410_030--Hb_002271_030 Hb_004619_030 Hb_004619_030 Hb_004410_030--Hb_004619_030 Hb_000011_200--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000011_200--Hb_000193_190 Hb_003158_010 Hb_003158_010 Hb_000011_200--Hb_003158_010 Hb_006827_020 Hb_006827_020 Hb_000011_200--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000011_200--Hb_007317_110 Hb_103012_010 Hb_103012_010 Hb_001946_010--Hb_103012_010 Hb_000260_170 Hb_000260_170 Hb_001946_010--Hb_000260_170 Hb_001946_010--Hb_011930_160 Hb_001946_010--Hb_000193_190 Hb_000205_100 Hb_000205_100 Hb_001946_010--Hb_000205_100 Hb_003878_070 Hb_003878_070 Hb_007575_050--Hb_003878_070 Hb_007575_050--Hb_000225_040 Hb_004954_070 Hb_004954_070 Hb_007575_050--Hb_004954_070 Hb_002518_280 Hb_002518_280 Hb_007575_050--Hb_002518_280 Hb_004412_010 Hb_004412_010 Hb_007575_050--Hb_004412_010 Hb_003163_020 Hb_003163_020 Hb_011930_160--Hb_003163_020 Hb_011930_160--Hb_004619_030 Hb_011930_160--Hb_000193_190 Hb_011930_160--Hb_103012_010 Hb_000462_060 Hb_000462_060 Hb_000617_180--Hb_000462_060 Hb_000347_070 Hb_000347_070 Hb_000617_180--Hb_000347_070 Hb_002375_010 Hb_002375_010 Hb_000617_180--Hb_002375_010 Hb_000617_180--Hb_004619_030 Hb_168978_030 Hb_168978_030 Hb_000617_180--Hb_168978_030 Hb_000008_290 Hb_000008_290 Hb_000617_180--Hb_000008_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0615 7.16079 7.4683 7.37489 12.0654 13.5811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8312 8.81783 7.86308 9.97707 8.44809

CAGE analysis