Hb_003025_140

Information

Type -
Description -
Location Contig3025: 128546-129856
Sequence    

Annotation

kegg
ID rcu:RCOM_1195020
description hypothetical protein
nr
ID XP_002520397.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q0R4F1
description ATP-dependent DNA helicase PIF1 OS=Xenopus laevis GN=pif1 PE=2 SV=1
trembl
ID B9S328
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1195020 PE=4 SV=1
Gene Ontology
ID GO:0000166
description atp-dependent dna helicase pif1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31912: 128884-129097 , PASA_asmbl_31914: 129997-130127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_114893_040 0.1153102854 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
3 Hb_163145_030 0.119724412 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
4 Hb_011861_050 0.1211522639 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
5 Hb_005147_080 0.1336239236 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_010344_020 0.133690091 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
7 Hb_000878_030 0.1355991287 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_007054_070 0.1393662431 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
9 Hb_000537_070 0.140981343 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
10 Hb_009486_040 0.1424832614 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001220_050 0.1431621344 - - DNA-damage-inducible protein f, putative [Ricinus communis]
12 Hb_000331_490 0.1443336543 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
13 Hb_000480_040 0.1458217742 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
14 Hb_000388_150 0.1461462953 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
15 Hb_130589_010 0.1472755617 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
16 Hb_001009_260 0.1492716032 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
17 Hb_003728_090 0.1496756837 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
18 Hb_000684_280 0.1503986074 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
19 Hb_000023_370 0.1513911926 - - -
20 Hb_189003_060 0.1530483567 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003025_140 Hb_003025_140 Hb_114893_040 Hb_114893_040 Hb_003025_140--Hb_114893_040 Hb_163145_030 Hb_163145_030 Hb_003025_140--Hb_163145_030 Hb_011861_050 Hb_011861_050 Hb_003025_140--Hb_011861_050 Hb_005147_080 Hb_005147_080 Hb_003025_140--Hb_005147_080 Hb_010344_020 Hb_010344_020 Hb_003025_140--Hb_010344_020 Hb_000878_030 Hb_000878_030 Hb_003025_140--Hb_000878_030 Hb_002835_160 Hb_002835_160 Hb_114893_040--Hb_002835_160 Hb_000085_070 Hb_000085_070 Hb_114893_040--Hb_000085_070 Hb_189003_060 Hb_189003_060 Hb_114893_040--Hb_189003_060 Hb_114893_040--Hb_011861_050 Hb_000480_040 Hb_000480_040 Hb_114893_040--Hb_000480_040 Hb_005914_210 Hb_005914_210 Hb_163145_030--Hb_005914_210 Hb_001009_260 Hb_001009_260 Hb_163145_030--Hb_001009_260 Hb_130589_010 Hb_130589_010 Hb_163145_030--Hb_130589_010 Hb_000640_260 Hb_000640_260 Hb_163145_030--Hb_000640_260 Hb_177343_010 Hb_177343_010 Hb_163145_030--Hb_177343_010 Hb_011861_050--Hb_000480_040 Hb_000144_060 Hb_000144_060 Hb_011861_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_011861_050--Hb_000345_370 Hb_000309_020 Hb_000309_020 Hb_011861_050--Hb_000309_020 Hb_000941_100 Hb_000941_100 Hb_011861_050--Hb_000941_100 Hb_011861_050--Hb_005147_080 Hb_002290_030 Hb_002290_030 Hb_005147_080--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_005147_080--Hb_004375_050 Hb_005147_080--Hb_010344_020 Hb_005147_080--Hb_189003_060 Hb_000318_130 Hb_000318_130 Hb_005147_080--Hb_000318_130 Hb_138585_030 Hb_138585_030 Hb_010344_020--Hb_138585_030 Hb_010344_020--Hb_011861_050 Hb_002915_010 Hb_002915_010 Hb_010344_020--Hb_002915_010 Hb_000208_190 Hb_000208_190 Hb_010344_020--Hb_000208_190 Hb_000094_100 Hb_000094_100 Hb_010344_020--Hb_000094_100 Hb_001220_050 Hb_001220_050 Hb_000878_030--Hb_001220_050 Hb_000878_030--Hb_001009_260 Hb_009020_040 Hb_009020_040 Hb_000878_030--Hb_009020_040 Hb_000331_490 Hb_000331_490 Hb_000878_030--Hb_000331_490 Hb_004735_020 Hb_004735_020 Hb_000878_030--Hb_004735_020 Hb_000878_030--Hb_114893_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1902 0.795121 2.50458 1.83704 0.47438 1.52149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.47486 0.5747 1.77157 0.666601 5.01872

CAGE analysis