Hb_003025_150

Information

Type -
Description -
Location Contig3025: 130970-138410
Sequence    

Annotation

kegg
ID rcu:RCOM_1192910
description hypothetical protein
nr
ID XP_002520376.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S307
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1192910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31915: 131742-132204 , PASA_asmbl_31916: 135693-135944 , PASA_asmbl_31917: 136252-136627 , PASA_asmbl_31918: 136900-137190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002324_040 0.0569056965 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
3 Hb_003579_040 0.0914579835 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
4 Hb_002324_050 0.109534177 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
5 Hb_012727_010 0.1127888823 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
6 Hb_002078_250 0.1133534198 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003656_170 0.1167029192 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
8 Hb_001048_070 0.1177949298 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
9 Hb_007625_030 0.1242181089 - - unknown [Medicago truncatula]
10 Hb_000411_050 0.1276358926 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
11 Hb_001776_100 0.1290081759 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
12 Hb_004421_010 0.1294324467 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
13 Hb_016564_060 0.1304134631 - - PREDICTED: uncharacterized protein LOC105628249 [Jatropha curcas]
14 Hb_000847_050 0.135765292 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
15 Hb_002431_090 0.1359870918 - - conserved hypothetical protein [Ricinus communis]
16 Hb_064047_010 0.1364455304 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002450_180 0.1396595561 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003849_200 0.1397111683 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
19 Hb_000613_250 0.13993354 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
20 Hb_003964_010 0.1407296545 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]

Gene co-expression network

sample Hb_003025_150 Hb_003025_150 Hb_002324_040 Hb_002324_040 Hb_003025_150--Hb_002324_040 Hb_003579_040 Hb_003579_040 Hb_003025_150--Hb_003579_040 Hb_002324_050 Hb_002324_050 Hb_003025_150--Hb_002324_050 Hb_012727_010 Hb_012727_010 Hb_003025_150--Hb_012727_010 Hb_002078_250 Hb_002078_250 Hb_003025_150--Hb_002078_250 Hb_003656_170 Hb_003656_170 Hb_003025_150--Hb_003656_170 Hb_002324_040--Hb_012727_010 Hb_002324_040--Hb_002324_050 Hb_002324_040--Hb_003579_040 Hb_064047_010 Hb_064047_010 Hb_002324_040--Hb_064047_010 Hb_004032_250 Hb_004032_250 Hb_002324_040--Hb_004032_250 Hb_000111_190 Hb_000111_190 Hb_003579_040--Hb_000111_190 Hb_003579_040--Hb_012727_010 Hb_000914_110 Hb_000914_110 Hb_003579_040--Hb_000914_110 Hb_004544_090 Hb_004544_090 Hb_003579_040--Hb_004544_090 Hb_002324_050--Hb_003656_170 Hb_002324_050--Hb_004032_250 Hb_003964_010 Hb_003964_010 Hb_002324_050--Hb_003964_010 Hb_001123_170 Hb_001123_170 Hb_002324_050--Hb_001123_170 Hb_003647_040 Hb_003647_040 Hb_012727_010--Hb_003647_040 Hb_001178_080 Hb_001178_080 Hb_012727_010--Hb_001178_080 Hb_001832_210 Hb_001832_210 Hb_012727_010--Hb_001832_210 Hb_000411_050 Hb_000411_050 Hb_002078_250--Hb_000411_050 Hb_002078_250--Hb_003656_170 Hb_002078_250--Hb_003964_010 Hb_002078_250--Hb_001123_170 Hb_002078_250--Hb_004544_090 Hb_003656_170--Hb_001123_170 Hb_003656_170--Hb_003964_010 Hb_004306_140 Hb_004306_140 Hb_003656_170--Hb_004306_140 Hb_050236_010 Hb_050236_010 Hb_003656_170--Hb_050236_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0163158 0.981257 0.50028 1.20737 0.0447528 0.0270325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0228466 0.0179794 0.0345088 0.673102 0.365768

CAGE analysis