Hb_003026_030

Information

Type -
Description -
Location Contig3026: 87322-90266
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04640g
description POPTRDRAFT_833248; transformer serine/arginine-rich ribonucleoprotein
nr
ID XP_002314126.1
description transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
swissprot
ID Q84TH4
description Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1 SV=1
trembl
ID B9HP82
description Transformer serine/arginine-rich ribonucleoprotein OS=Populus trichocarpa GN=POPTR_0009s04640g PE=4 SV=1
Gene Ontology
ID GO:0019013
description serine arginine-rich splicing factor sr45a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31922: 87457-90379 , PASA_asmbl_31923: 87457-90379 , PASA_asmbl_31924: 87457-89261 , PASA_asmbl_31925: 87600-88083
cDNA
(Sanger)
(ID:Location)		 026_P06.ab1: 87457-89025

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003026_030 0.0 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
2 Hb_000264_180 0.1199265494 - - PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
3 Hb_044155_010 0.1273827747 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
4 Hb_002400_230 0.1406530992 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
5 Hb_002291_060 0.1408563254 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
6 Hb_000997_150 0.1491899434 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_002450_140 0.1511677597 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
8 Hb_001051_090 0.1550483798 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
9 Hb_000732_070 0.1550702454 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
10 Hb_152540_010 0.1555915408 - - -
11 Hb_001269_310 0.1557490101 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
12 Hb_000136_030 0.1593141583 - - serine/arginine rich splicing factor, putative [Ricinus communis]
13 Hb_000024_120 0.1609983864 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
14 Hb_000116_510 0.1642083687 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
15 Hb_002896_060 0.1650813678 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
16 Hb_003638_010 0.166977013 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
17 Hb_000077_010 0.1671705834 - - unnamed protein product [Vitis vinifera]
18 Hb_002942_090 0.1672840645 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
19 Hb_000334_170 0.16849438 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
20 Hb_000175_630 0.1688893608 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003026_030 Hb_003026_030 Hb_000264_180 Hb_000264_180 Hb_003026_030--Hb_000264_180 Hb_044155_010 Hb_044155_010 Hb_003026_030--Hb_044155_010 Hb_002400_230 Hb_002400_230 Hb_003026_030--Hb_002400_230 Hb_002291_060 Hb_002291_060 Hb_003026_030--Hb_002291_060 Hb_000997_150 Hb_000997_150 Hb_003026_030--Hb_000997_150 Hb_002450_140 Hb_002450_140 Hb_003026_030--Hb_002450_140 Hb_001040_070 Hb_001040_070 Hb_000264_180--Hb_001040_070 Hb_000175_630 Hb_000175_630 Hb_000264_180--Hb_000175_630 Hb_006573_160 Hb_006573_160 Hb_000264_180--Hb_006573_160 Hb_000264_180--Hb_044155_010 Hb_001427_210 Hb_001427_210 Hb_000264_180--Hb_001427_210 Hb_000077_120 Hb_000077_120 Hb_044155_010--Hb_000077_120 Hb_013405_150 Hb_013405_150 Hb_044155_010--Hb_013405_150 Hb_044155_010--Hb_002291_060 Hb_006132_040 Hb_006132_040 Hb_044155_010--Hb_006132_040 Hb_000139_220 Hb_000139_220 Hb_044155_010--Hb_000139_220 Hb_000098_140 Hb_000098_140 Hb_044155_010--Hb_000098_140 Hb_000732_070 Hb_000732_070 Hb_002400_230--Hb_000732_070 Hb_001454_170 Hb_001454_170 Hb_002400_230--Hb_001454_170 Hb_000334_130 Hb_000334_130 Hb_002400_230--Hb_000334_130 Hb_001454_220 Hb_001454_220 Hb_002400_230--Hb_001454_220 Hb_152540_010 Hb_152540_010 Hb_002400_230--Hb_152540_010 Hb_004032_230 Hb_004032_230 Hb_002400_230--Hb_004032_230 Hb_002291_060--Hb_000077_120 Hb_002291_060--Hb_000139_220 Hb_000345_490 Hb_000345_490 Hb_002291_060--Hb_000345_490 Hb_010287_030 Hb_010287_030 Hb_002291_060--Hb_010287_030 Hb_172257_010 Hb_172257_010 Hb_002291_060--Hb_172257_010 Hb_000997_150--Hb_000732_070 Hb_000997_150--Hb_001454_220 Hb_001269_310 Hb_001269_310 Hb_000997_150--Hb_001269_310 Hb_000997_150--Hb_002400_230 Hb_000997_150--Hb_044155_010 Hb_000185_150 Hb_000185_150 Hb_000997_150--Hb_000185_150 Hb_001269_510 Hb_001269_510 Hb_002450_140--Hb_001269_510 Hb_002450_140--Hb_000997_150 Hb_002450_140--Hb_044155_010 Hb_023001_070 Hb_023001_070 Hb_002450_140--Hb_023001_070 Hb_001300_100 Hb_001300_100 Hb_002450_140--Hb_001300_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.4123 157.883 233.266 56.6301 250.729 72.1628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.3604 36.0728 12.27 48.6702 105.619

CAGE analysis