Hb_003029_020

Information

Type -
Description -
Location Contig3029: 6934-11320
Sequence    

Annotation

kegg
ID rcu:RCOM_1346960
description ATP-dependent Clp protease proteolytic subunit, putative (EC:3.4.21.92)
nr
ID XP_002515273.1
description ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
swissprot
ID Q9S834
description ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1
trembl
ID B9RND4
description ATP-dependent Clp protease proteolytic subunit OS=Ricinus communis GN=RCOM_1346960 PE=3 SV=1
Gene Ontology
ID GO:0009534
description atp-dependent clp protease proteolytic subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31931: 6948-11271 , PASA_asmbl_31933: 12016-15792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003029_020 0.0 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
2 Hb_010128_020 0.0787646755 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
3 Hb_025194_090 0.0790790058 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
4 Hb_002075_030 0.0838043646 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
5 Hb_002542_160 0.102484652 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
6 Hb_003171_030 0.1026638036 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
7 Hb_001438_010 0.1047203466 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
8 Hb_004629_030 0.1055677071 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_000112_060 0.1061955436 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
10 Hb_189003_060 0.1062598992 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000032_500 0.1066891941 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
12 Hb_004871_010 0.1072507137 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
13 Hb_002290_030 0.1072981011 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
14 Hb_009288_040 0.1076945995 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
15 Hb_000311_120 0.1082428719 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
16 Hb_003124_120 0.1083307105 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
17 Hb_001959_060 0.1083326779 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
18 Hb_000548_060 0.1084956114 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
19 Hb_000345_370 0.1086917341 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
20 Hb_001195_770 0.1087963783 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]

Gene co-expression network

sample Hb_003029_020 Hb_003029_020 Hb_010128_020 Hb_010128_020 Hb_003029_020--Hb_010128_020 Hb_025194_090 Hb_025194_090 Hb_003029_020--Hb_025194_090 Hb_002075_030 Hb_002075_030 Hb_003029_020--Hb_002075_030 Hb_002542_160 Hb_002542_160 Hb_003029_020--Hb_002542_160 Hb_003171_030 Hb_003171_030 Hb_003029_020--Hb_003171_030 Hb_001438_010 Hb_001438_010 Hb_003029_020--Hb_001438_010 Hb_003124_120 Hb_003124_120 Hb_010128_020--Hb_003124_120 Hb_000983_070 Hb_000983_070 Hb_010128_020--Hb_000983_070 Hb_010128_020--Hb_002075_030 Hb_000816_200 Hb_000816_200 Hb_010128_020--Hb_000816_200 Hb_000112_060 Hb_000112_060 Hb_010128_020--Hb_000112_060 Hb_000579_040 Hb_000579_040 Hb_025194_090--Hb_000579_040 Hb_004502_010 Hb_004502_010 Hb_025194_090--Hb_004502_010 Hb_004629_030 Hb_004629_030 Hb_025194_090--Hb_004629_030 Hb_002928_030 Hb_002928_030 Hb_025194_090--Hb_002928_030 Hb_000496_130 Hb_000496_130 Hb_025194_090--Hb_000496_130 Hb_032631_070 Hb_032631_070 Hb_002075_030--Hb_032631_070 Hb_001307_100 Hb_001307_100 Hb_002075_030--Hb_001307_100 Hb_002075_030--Hb_000579_040 Hb_007441_310 Hb_007441_310 Hb_002075_030--Hb_007441_310 Hb_000220_210 Hb_000220_210 Hb_002542_160--Hb_000220_210 Hb_000309_020 Hb_000309_020 Hb_002542_160--Hb_000309_020 Hb_000345_370 Hb_000345_370 Hb_002542_160--Hb_000345_370 Hb_000085_070 Hb_000085_070 Hb_002542_160--Hb_000085_070 Hb_016461_030 Hb_016461_030 Hb_002542_160--Hb_016461_030 Hb_000032_500 Hb_000032_500 Hb_002542_160--Hb_000032_500 Hb_009687_020 Hb_009687_020 Hb_003171_030--Hb_009687_020 Hb_006198_130 Hb_006198_130 Hb_003171_030--Hb_006198_130 Hb_000059_270 Hb_000059_270 Hb_003171_030--Hb_000059_270 Hb_003171_030--Hb_000816_200 Hb_001723_030 Hb_001723_030 Hb_003171_030--Hb_001723_030 Hb_001269_500 Hb_001269_500 Hb_003171_030--Hb_001269_500 Hb_007741_110 Hb_007741_110 Hb_001438_010--Hb_007741_110 Hb_003053_110 Hb_003053_110 Hb_001438_010--Hb_003053_110 Hb_001195_770 Hb_001195_770 Hb_001438_010--Hb_001195_770 Hb_006907_060 Hb_006907_060 Hb_001438_010--Hb_006907_060 Hb_000941_100 Hb_000941_100 Hb_001438_010--Hb_000941_100 Hb_000529_180 Hb_000529_180 Hb_001438_010--Hb_000529_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.8707 9.80851 28.1323 10.5756 5.1205 6.4
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.69524 12.0114 5.36661 10.6758 41.8593

CAGE analysis