Hb_003029_060

Information

Type -
Description -
Location Contig3029: 33803-39574
Sequence    

Annotation

kegg
ID pop:POPTR_0002s19550g
description POPTRDRAFT_409553; hypothetical protein
nr
ID XP_012082910.1
description PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
swissprot
ID Q8RWW0
description Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1
trembl
ID A0A067JWE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14042 PE=3 SV=1
Gene Ontology
ID GO:0005886
description receptor-like serine threonine-protein kinase ale2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31935: 33923-39667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003029_060 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
2 Hb_003929_190 0.1214535783 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
3 Hb_005941_030 0.1247171258 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
4 Hb_009838_020 0.1349470196 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
5 Hb_014497_040 0.1416441411 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
6 Hb_000071_160 0.1603199629 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
7 Hb_000977_290 0.1662310484 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
8 Hb_000012_400 0.1689321027 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
9 Hb_004631_170 0.1695447856 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000562_100 0.1747299495 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
11 Hb_000422_130 0.1755671401 - - hypothetical protein JCGZ_15217 [Jatropha curcas]
12 Hb_007192_020 0.1764895494 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
13 Hb_150440_010 0.1823331906 - - -
14 Hb_001595_040 0.1823952825 - - Root phototropism protein, putative [Ricinus communis]
15 Hb_102710_010 0.1900821463 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
16 Hb_002539_050 0.1935267343 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
17 Hb_003102_030 0.1937134901 - - PREDICTED: uncharacterized protein LOC105644418 [Jatropha curcas]
18 Hb_000236_160 0.1941748801 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
19 Hb_002488_010 0.1947139445 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
20 Hb_005618_130 0.199067256 - - PREDICTED: probable polygalacturonase [Jatropha curcas]

Gene co-expression network

sample Hb_003029_060 Hb_003029_060 Hb_003929_190 Hb_003929_190 Hb_003029_060--Hb_003929_190 Hb_005941_030 Hb_005941_030 Hb_003029_060--Hb_005941_030 Hb_009838_020 Hb_009838_020 Hb_003029_060--Hb_009838_020 Hb_014497_040 Hb_014497_040 Hb_003029_060--Hb_014497_040 Hb_000071_160 Hb_000071_160 Hb_003029_060--Hb_000071_160 Hb_000977_290 Hb_000977_290 Hb_003029_060--Hb_000977_290 Hb_000012_400 Hb_000012_400 Hb_003929_190--Hb_000012_400 Hb_002539_050 Hb_002539_050 Hb_003929_190--Hb_002539_050 Hb_003929_190--Hb_005941_030 Hb_003929_190--Hb_000071_160 Hb_000203_070 Hb_000203_070 Hb_003929_190--Hb_000203_070 Hb_005941_030--Hb_000071_160 Hb_005941_030--Hb_014497_040 Hb_011828_010 Hb_011828_010 Hb_005941_030--Hb_011828_010 Hb_014361_090 Hb_014361_090 Hb_005941_030--Hb_014361_090 Hb_005941_030--Hb_009838_020 Hb_004899_340 Hb_004899_340 Hb_009838_020--Hb_004899_340 Hb_001221_190 Hb_001221_190 Hb_009838_020--Hb_001221_190 Hb_009838_020--Hb_000071_160 Hb_009838_020--Hb_000977_290 Hb_014497_040--Hb_000012_400 Hb_010812_110 Hb_010812_110 Hb_014497_040--Hb_010812_110 Hb_000562_100 Hb_000562_100 Hb_014497_040--Hb_000562_100 Hb_004631_170 Hb_004631_170 Hb_014497_040--Hb_004631_170 Hb_000071_160--Hb_014361_090 Hb_000071_160--Hb_011828_010 Hb_000271_220 Hb_000271_220 Hb_000071_160--Hb_000271_220 Hb_000071_160--Hb_004899_340 Hb_010984_020 Hb_010984_020 Hb_000977_290--Hb_010984_020 Hb_000959_300 Hb_000959_300 Hb_000977_290--Hb_000959_300 Hb_007192_020 Hb_007192_020 Hb_000977_290--Hb_007192_020 Hb_002488_010 Hb_002488_010 Hb_000977_290--Hb_002488_010 Hb_004710_020 Hb_004710_020 Hb_000977_290--Hb_004710_020 Hb_001140_180 Hb_001140_180 Hb_000977_290--Hb_001140_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.72351 0.849303 1.66132 3.66594 0.288273 1.2865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0479272 0.0251429 0.0240098 1.15744 1.60654

CAGE analysis