Hb_003029_070

Information

Type -
Description -
Location Contig3029: 47349-49252
Sequence    

Annotation

kegg
ID rcu:RCOM_1346590
description hypothetical protein
nr
ID XP_012082918.1
description PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q7XA78
description Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 SV=1
trembl
ID A0A067JZS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14044 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31936: 47374-49119 , PASA_asmbl_31937: 48539-49119 , PASA_asmbl_31939: 49815-51537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003029_070 0.0 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000753_240 0.0595482306 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
3 Hb_002876_220 0.0681190891 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
4 Hb_000300_180 0.06943093 - - transcription initiation factor brf1, putative [Ricinus communis]
5 Hb_012022_150 0.070916232 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
6 Hb_004970_190 0.0729673018 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_000804_040 0.0773714896 - - protein with unknown function [Ricinus communis]
8 Hb_000227_170 0.0809921243 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_000190_030 0.0901128717 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
10 Hb_000640_160 0.0906186724 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
11 Hb_012395_230 0.0907522521 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
12 Hb_001975_090 0.0923356006 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
13 Hb_000080_120 0.0933618359 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
14 Hb_000757_030 0.0943863691 - - radical sam protein, putative [Ricinus communis]
15 Hb_000245_220 0.0973946786 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
16 Hb_003513_010 0.0974858235 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
17 Hb_022693_140 0.0987830973 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
18 Hb_000300_670 0.0990817823 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
19 Hb_000051_060 0.0993156506 - - conserved hypothetical protein [Ricinus communis]
20 Hb_107879_010 0.0995158153 - - phosphoglycerate mutase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003029_070 Hb_003029_070 Hb_000753_240 Hb_000753_240 Hb_003029_070--Hb_000753_240 Hb_002876_220 Hb_002876_220 Hb_003029_070--Hb_002876_220 Hb_000300_180 Hb_000300_180 Hb_003029_070--Hb_000300_180 Hb_012022_150 Hb_012022_150 Hb_003029_070--Hb_012022_150 Hb_004970_190 Hb_004970_190 Hb_003029_070--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_003029_070--Hb_000804_040 Hb_000753_240--Hb_004970_190 Hb_000866_010 Hb_000866_010 Hb_000753_240--Hb_000866_010 Hb_000866_260 Hb_000866_260 Hb_000753_240--Hb_000866_260 Hb_002013_020 Hb_002013_020 Hb_000753_240--Hb_002013_020 Hb_000753_240--Hb_000804_040 Hb_002876_220--Hb_000300_180 Hb_002876_220--Hb_012022_150 Hb_007002_020 Hb_007002_020 Hb_002876_220--Hb_007002_020 Hb_000051_060 Hb_000051_060 Hb_002876_220--Hb_000051_060 Hb_001935_100 Hb_001935_100 Hb_002876_220--Hb_001935_100 Hb_000757_030 Hb_000757_030 Hb_000300_180--Hb_000757_030 Hb_000640_160 Hb_000640_160 Hb_000300_180--Hb_000640_160 Hb_000190_030 Hb_000190_030 Hb_000300_180--Hb_000190_030 Hb_000304_070 Hb_000304_070 Hb_000300_180--Hb_000304_070 Hb_022693_140 Hb_022693_140 Hb_012022_150--Hb_022693_140 Hb_000224_160 Hb_000224_160 Hb_012022_150--Hb_000224_160 Hb_002163_040 Hb_002163_040 Hb_012022_150--Hb_002163_040 Hb_012022_150--Hb_000804_040 Hb_012022_150--Hb_000753_240 Hb_012395_230 Hb_012395_230 Hb_004970_190--Hb_012395_230 Hb_000205_190 Hb_000205_190 Hb_004970_190--Hb_000205_190 Hb_007007_120 Hb_007007_120 Hb_004970_190--Hb_007007_120 Hb_003513_010 Hb_003513_010 Hb_004970_190--Hb_003513_010 Hb_000869_020 Hb_000869_020 Hb_004970_190--Hb_000869_020 Hb_000804_040--Hb_000205_190 Hb_000804_040--Hb_022693_140 Hb_000804_040--Hb_004970_190 Hb_001322_140 Hb_001322_140 Hb_000804_040--Hb_001322_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.741 5.89905 17.6257 5.98467 11.2471 8.84531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2075 10.585 8.12642 5.24583 14.8875

CAGE analysis