Hb_003029_110

Information

Type -
Description -
Location Contig3029: 71264-76444
Sequence    

Annotation

kegg
ID rcu:RCOM_1346560
description hypothetical protein
nr
ID XP_012079662.1
description PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
swissprot
ID Q99575
description Ribonucleases P/MRP protein subunit POP1 OS=Homo sapiens GN=POP1 PE=1 SV=2
trembl
ID A0A067K9F6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14964 PE=4 SV=1
Gene Ontology
ID GO:0004526
description ribonucleases p mrp protein subunit pop1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31943: 71328-72657 , PASA_asmbl_31945: 72817-76289 , PASA_asmbl_31946: 75311-75497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003029_110 0.0 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
2 Hb_000166_130 0.0333049564 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001195_320 0.0536650669 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
4 Hb_005731_030 0.0573374358 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
5 Hb_000343_120 0.0596826317 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
6 Hb_010222_050 0.0606929216 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
7 Hb_003371_110 0.062242846 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
8 Hb_009545_100 0.0624752371 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
9 Hb_000796_030 0.0654852516 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
10 Hb_001550_060 0.0666687693 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
11 Hb_006420_040 0.0668709568 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
12 Hb_001199_100 0.0677082463 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
13 Hb_000035_290 0.0693454608 - - RNA recognition motif-containing family protein [Populus trichocarpa]
14 Hb_000190_120 0.0700092656 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
15 Hb_000029_300 0.070558943 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
16 Hb_005054_090 0.0716007807 - - PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
17 Hb_000060_090 0.0723408994 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
18 Hb_000183_020 0.073391193 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
19 Hb_014361_070 0.0736499168 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
20 Hb_006882_020 0.0741498804 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003029_110 Hb_003029_110 Hb_000166_130 Hb_000166_130 Hb_003029_110--Hb_000166_130 Hb_001195_320 Hb_001195_320 Hb_003029_110--Hb_001195_320 Hb_005731_030 Hb_005731_030 Hb_003029_110--Hb_005731_030 Hb_000343_120 Hb_000343_120 Hb_003029_110--Hb_000343_120 Hb_010222_050 Hb_010222_050 Hb_003029_110--Hb_010222_050 Hb_003371_110 Hb_003371_110 Hb_003029_110--Hb_003371_110 Hb_000166_130--Hb_000343_120 Hb_000166_130--Hb_001195_320 Hb_000035_290 Hb_000035_290 Hb_000166_130--Hb_000035_290 Hb_000166_130--Hb_003371_110 Hb_001199_100 Hb_001199_100 Hb_000166_130--Hb_001199_100 Hb_001195_320--Hb_003371_110 Hb_002329_040 Hb_002329_040 Hb_001195_320--Hb_002329_040 Hb_014361_070 Hb_014361_070 Hb_001195_320--Hb_014361_070 Hb_000183_020 Hb_000183_020 Hb_001195_320--Hb_000183_020 Hb_005731_030--Hb_010222_050 Hb_123352_020 Hb_123352_020 Hb_005731_030--Hb_123352_020 Hb_000820_170 Hb_000820_170 Hb_005731_030--Hb_000820_170 Hb_002518_280 Hb_002518_280 Hb_005731_030--Hb_002518_280 Hb_010618_010 Hb_010618_010 Hb_005731_030--Hb_010618_010 Hb_000343_120--Hb_000035_290 Hb_000028_280 Hb_000028_280 Hb_000343_120--Hb_000028_280 Hb_009545_100 Hb_009545_100 Hb_000343_120--Hb_009545_100 Hb_000343_120--Hb_001199_100 Hb_000060_090 Hb_000060_090 Hb_010222_050--Hb_000060_090 Hb_000152_380 Hb_000152_380 Hb_010222_050--Hb_000152_380 Hb_000502_050 Hb_000502_050 Hb_010222_050--Hb_000502_050 Hb_002823_030 Hb_002823_030 Hb_010222_050--Hb_002823_030 Hb_003371_110--Hb_014361_070 Hb_003371_110--Hb_002823_030 Hb_000190_120 Hb_000190_120 Hb_003371_110--Hb_000190_120 Hb_004935_030 Hb_004935_030 Hb_003371_110--Hb_004935_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.34789 7.96634 4.58662 5.11958 9.11105 10.4479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.92972 5.98506 6.79582 6.06113 7.07099

CAGE analysis