Hb_003029_120

Information

Type -
Description -
Location Contig3029: 82234-86555
Sequence    

Annotation

kegg
ID rcu:RCOM_1346550
description hypothetical protein
nr
ID XP_012082924.1
description PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14047 PE=4 SV=1
Gene Ontology
ID GO:0005768
description heme binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31947: 82229-86500
cDNA
(Sanger)
(ID:Location)		 011_E07.ab1: 83100-86500 , 025_K16.ab1: 83764-86500 , 037_A02.ab1: 83813-86500 , 044_C09.ab1: 83761-86500 , 046_I23.ab1: 83761-86500 , 051_B01.ab1: 85124-86500

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003029_120 0.0 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
2 Hb_001946_200 0.1140804674 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
3 Hb_070498_010 0.1197035031 - - receptor kinase, putative [Ricinus communis]
4 Hb_000453_020 0.1220355587 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_001195_550 0.1229662894 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
6 Hb_000482_120 0.1250676537 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
7 Hb_012404_020 0.1257304288 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001188_050 0.1300001159 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001040_080 0.1321876417 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
10 Hb_022092_110 0.1337593187 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
11 Hb_003606_050 0.1343217686 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
12 Hb_000692_100 0.135350436 - - calcium-dependent protein kinase, putative [Ricinus communis]
13 Hb_004218_200 0.1373768081 - - Ran GTPase binding protein, putative [Ricinus communis]
14 Hb_143629_120 0.1393921767 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
15 Hb_000834_180 0.1394253746 - - PREDICTED: kinesin-13A-like isoform X1 [Jatropha curcas]
16 Hb_000996_030 0.1401965577 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
17 Hb_001054_040 0.1411937031 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
18 Hb_006816_490 0.1420240977 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 21 [Jatropha curcas]
19 Hb_032920_030 0.1431665228 - - signal transducer, putative [Ricinus communis]
20 Hb_008686_010 0.143386548 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003029_120 Hb_003029_120 Hb_001946_200 Hb_001946_200 Hb_003029_120--Hb_001946_200 Hb_070498_010 Hb_070498_010 Hb_003029_120--Hb_070498_010 Hb_000453_020 Hb_000453_020 Hb_003029_120--Hb_000453_020 Hb_001195_550 Hb_001195_550 Hb_003029_120--Hb_001195_550 Hb_000482_120 Hb_000482_120 Hb_003029_120--Hb_000482_120 Hb_012404_020 Hb_012404_020 Hb_003029_120--Hb_012404_020 Hb_001440_010 Hb_001440_010 Hb_001946_200--Hb_001440_010 Hb_022092_110 Hb_022092_110 Hb_001946_200--Hb_022092_110 Hb_001936_180 Hb_001936_180 Hb_001946_200--Hb_001936_180 Hb_009113_080 Hb_009113_080 Hb_001946_200--Hb_009113_080 Hb_026240_020 Hb_026240_020 Hb_001946_200--Hb_026240_020 Hb_032920_030 Hb_032920_030 Hb_001946_200--Hb_032920_030 Hb_128196_010 Hb_128196_010 Hb_070498_010--Hb_128196_010 Hb_002301_400 Hb_002301_400 Hb_070498_010--Hb_002301_400 Hb_000996_030 Hb_000996_030 Hb_070498_010--Hb_000996_030 Hb_070498_010--Hb_012404_020 Hb_011918_070 Hb_011918_070 Hb_070498_010--Hb_011918_070 Hb_000003_750 Hb_000003_750 Hb_070498_010--Hb_000003_750 Hb_000453_020--Hb_000482_120 Hb_010337_040 Hb_010337_040 Hb_000453_020--Hb_010337_040 Hb_003488_040 Hb_003488_040 Hb_000453_020--Hb_003488_040 Hb_002184_080 Hb_002184_080 Hb_000453_020--Hb_002184_080 Hb_012539_100 Hb_012539_100 Hb_000453_020--Hb_012539_100 Hb_169893_010 Hb_169893_010 Hb_001195_550--Hb_169893_010 Hb_008686_010 Hb_008686_010 Hb_001195_550--Hb_008686_010 Hb_001195_550--Hb_070498_010 Hb_001195_550--Hb_002301_400 Hb_001159_090 Hb_001159_090 Hb_001195_550--Hb_001159_090 Hb_002639_050 Hb_002639_050 Hb_001195_550--Hb_002639_050 Hb_000692_100 Hb_000692_100 Hb_000482_120--Hb_000692_100 Hb_001855_020 Hb_001855_020 Hb_000482_120--Hb_001855_020 Hb_000574_170 Hb_000574_170 Hb_000482_120--Hb_000574_170 Hb_000482_120--Hb_010337_040 Hb_012404_020--Hb_002301_400 Hb_012404_020--Hb_128196_010 Hb_005730_110 Hb_005730_110 Hb_012404_020--Hb_005730_110 Hb_001366_290 Hb_001366_290 Hb_012404_020--Hb_001366_290 Hb_028008_040 Hb_028008_040 Hb_012404_020--Hb_028008_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.345964 5.41509 15.2589 19.8399 0.862037 1.67054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0270598 0.0506687 3.95802 8.57318

CAGE analysis