Hb_003029_130

Information

Type -
Description -
Location Contig3029: 98070-112060
Sequence    

Annotation

kegg
ID rcu:RCOM_1346540
description carboxypeptidase regulatory region-containingprotein, putative
nr
ID XP_002515261.1
description carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
swissprot
ID Q6GQT9
description Nodal modulator 1 OS=Mus musculus GN=Nomo1 PE=1 SV=1
trembl
ID B9RNC2
description Carboxypeptidase regulatory region-containingprotein, putative OS=Ricinus communis GN=RCOM_1346540 PE=4 SV=1
Gene Ontology
ID GO:0005774
description nodal modulator 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31948: 99971-111875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003029_130 0.0 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
2 Hb_000487_220 0.0481077743 - - eukaryotic translation elongation factor, putative [Ricinus communis]
3 Hb_015099_010 0.0632813329 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
4 Hb_001473_090 0.0703139989 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
5 Hb_000935_090 0.0713419349 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
6 Hb_001178_150 0.0729205432 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
7 Hb_010925_020 0.0729589612 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
8 Hb_000475_020 0.0790761402 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
9 Hb_002392_030 0.0816373737 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
10 Hb_002066_080 0.0818537683 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
11 Hb_001811_120 0.0826318188 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
12 Hb_000209_070 0.0838605579 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
13 Hb_000347_570 0.0838650191 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
14 Hb_004970_160 0.0860616769 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
15 Hb_003436_050 0.0861720842 - - arf gtpase-activating protein, putative [Ricinus communis]
16 Hb_003529_130 0.0876836529 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
17 Hb_001493_040 0.0879671912 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
18 Hb_003656_180 0.0880109139 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
19 Hb_000120_620 0.0881254345 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
20 Hb_000363_380 0.0896293287 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]

Gene co-expression network

sample Hb_003029_130 Hb_003029_130 Hb_000487_220 Hb_000487_220 Hb_003029_130--Hb_000487_220 Hb_015099_010 Hb_015099_010 Hb_003029_130--Hb_015099_010 Hb_001473_090 Hb_001473_090 Hb_003029_130--Hb_001473_090 Hb_000935_090 Hb_000935_090 Hb_003029_130--Hb_000935_090 Hb_001178_150 Hb_001178_150 Hb_003029_130--Hb_001178_150 Hb_010925_020 Hb_010925_020 Hb_003029_130--Hb_010925_020 Hb_000475_020 Hb_000475_020 Hb_000487_220--Hb_000475_020 Hb_000504_150 Hb_000504_150 Hb_000487_220--Hb_000504_150 Hb_001811_120 Hb_001811_120 Hb_000487_220--Hb_001811_120 Hb_004970_160 Hb_004970_160 Hb_000487_220--Hb_004970_160 Hb_000209_070 Hb_000209_070 Hb_000487_220--Hb_000209_070 Hb_000375_130 Hb_000375_130 Hb_015099_010--Hb_000375_130 Hb_000832_220 Hb_000832_220 Hb_015099_010--Hb_000832_220 Hb_002392_030 Hb_002392_030 Hb_015099_010--Hb_002392_030 Hb_003124_130 Hb_003124_130 Hb_015099_010--Hb_003124_130 Hb_015099_010--Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040 Hb_000935_090--Hb_001178_150 Hb_001493_040 Hb_001493_040 Hb_000935_090--Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_000935_090--Hb_001417_050 Hb_000796_190 Hb_000796_190 Hb_000935_090--Hb_000796_190 Hb_000025_650 Hb_000025_650 Hb_000935_090--Hb_000025_650 Hb_004429_160 Hb_004429_160 Hb_000935_090--Hb_004429_160 Hb_001178_150--Hb_000347_570 Hb_001178_150--Hb_000796_190 Hb_001178_150--Hb_009151_020 Hb_000120_620 Hb_000120_620 Hb_001178_150--Hb_000120_620 Hb_010925_020--Hb_001473_090 Hb_010925_020--Hb_000935_090 Hb_010925_020--Hb_001178_150 Hb_001369_350 Hb_001369_350 Hb_010925_020--Hb_001369_350 Hb_029904_020 Hb_029904_020 Hb_010925_020--Hb_029904_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7894 18.3964 11.1046 11.075 25.564 35.2016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.60321 3.6284 7.49923 13.0782 14.0534

CAGE analysis