Hb_003030_030

Information

Type -
Description -
Location Contig3030: 53856-56868
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31967: 51650-88286 , PASA_asmbl_31968: 51668-85710 , PASA_asmbl_31972: 54834-55149
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003030_030 0.0 - - -
2 Hb_000656_090 0.1501536509 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
3 Hb_003141_070 0.1643116773 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
4 Hb_004445_020 0.1653952772 - - hypothetical protein JCGZ_13166 [Jatropha curcas]
5 Hb_000105_120 0.1664552711 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
6 Hb_015978_110 0.1671830162 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Jatropha curcas]
7 Hb_003606_060 0.1678029727 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
8 Hb_142328_010 0.1721071849 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
9 Hb_012627_020 0.1734541513 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
10 Hb_004303_040 0.1752260556 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
11 Hb_001953_080 0.1790029217 - - pseudouridine synthase family protein, partial [Manihot esculenta]
12 Hb_006274_040 0.1796159815 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
13 Hb_002079_050 0.1821078241 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
14 Hb_026745_020 0.1830584831 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
15 Hb_002200_040 0.1834408145 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
16 Hb_006275_070 0.1866562061 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
17 Hb_000300_660 0.1878441598 - - unknown [Glycine max]
18 Hb_000983_040 0.1894559057 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
19 Hb_138781_010 0.1912455865 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
20 Hb_004333_050 0.1927867734 - - -

Gene co-expression network

sample Hb_003030_030 Hb_003030_030 Hb_000656_090 Hb_000656_090 Hb_003030_030--Hb_000656_090 Hb_003141_070 Hb_003141_070 Hb_003030_030--Hb_003141_070 Hb_004445_020 Hb_004445_020 Hb_003030_030--Hb_004445_020 Hb_000105_120 Hb_000105_120 Hb_003030_030--Hb_000105_120 Hb_015978_110 Hb_015978_110 Hb_003030_030--Hb_015978_110 Hb_003606_060 Hb_003606_060 Hb_003030_030--Hb_003606_060 Hb_008447_030 Hb_008447_030 Hb_000656_090--Hb_008447_030 Hb_012627_020 Hb_012627_020 Hb_000656_090--Hb_012627_020 Hb_000160_160 Hb_000160_160 Hb_000656_090--Hb_000160_160 Hb_008447_040 Hb_008447_040 Hb_000656_090--Hb_008447_040 Hb_026745_020 Hb_026745_020 Hb_000656_090--Hb_026745_020 Hb_004935_060 Hb_004935_060 Hb_003141_070--Hb_004935_060 Hb_002304_040 Hb_002304_040 Hb_003141_070--Hb_002304_040 Hb_002735_050 Hb_002735_050 Hb_003141_070--Hb_002735_050 Hb_025098_010 Hb_025098_010 Hb_003141_070--Hb_025098_010 Hb_005144_050 Hb_005144_050 Hb_003141_070--Hb_005144_050 Hb_003529_030 Hb_003529_030 Hb_003141_070--Hb_003529_030 Hb_005078_010 Hb_005078_010 Hb_004445_020--Hb_005078_010 Hb_000084_200 Hb_000084_200 Hb_004445_020--Hb_000084_200 Hb_138781_010 Hb_138781_010 Hb_004445_020--Hb_138781_010 Hb_032920_050 Hb_032920_050 Hb_004445_020--Hb_032920_050 Hb_004445_020--Hb_026745_020 Hb_000120_770 Hb_000120_770 Hb_000105_120--Hb_000120_770 Hb_000327_110 Hb_000327_110 Hb_000105_120--Hb_000327_110 Hb_006683_070 Hb_006683_070 Hb_000105_120--Hb_006683_070 Hb_000984_240 Hb_000984_240 Hb_000105_120--Hb_000984_240 Hb_012506_060 Hb_012506_060 Hb_000105_120--Hb_012506_060 Hb_000122_070 Hb_000122_070 Hb_000105_120--Hb_000122_070 Hb_021495_020 Hb_021495_020 Hb_015978_110--Hb_021495_020 Hb_000656_330 Hb_000656_330 Hb_015978_110--Hb_000656_330 Hb_000381_010 Hb_000381_010 Hb_015978_110--Hb_000381_010 Hb_113818_010 Hb_113818_010 Hb_015978_110--Hb_113818_010 Hb_000417_170 Hb_000417_170 Hb_015978_110--Hb_000417_170 Hb_000525_090 Hb_000525_090 Hb_003606_060--Hb_000525_090 Hb_000586_030 Hb_000586_030 Hb_003606_060--Hb_000586_030 Hb_002200_040 Hb_002200_040 Hb_003606_060--Hb_002200_040 Hb_004046_030 Hb_004046_030 Hb_003606_060--Hb_004046_030 Hb_000107_110 Hb_000107_110 Hb_003606_060--Hb_000107_110 Hb_000019_180 Hb_000019_180 Hb_003606_060--Hb_000019_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.198263 0.0457476 0.1245 0.722737 0.186634 0.838197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.251197 0.444441 0.448795 0.279327 1.09615

CAGE analysis