Hb_003030_040

Information

Type -
Description -
Location Contig3030: 64414-65119
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G102900g
description hypothetical protein
nr
ID KDO49450.1
description hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
swissprot
ID Q9NQG5
description Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens GN=RPRD1B PE=1 SV=1
trembl
ID A0A067E6D5
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0466212mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31967: 51650-88286 , PASA_asmbl_31968: 51668-85710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003030_040 0.0 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
2 Hb_002815_050 0.1066698312 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
3 Hb_031866_050 0.134967947 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
4 Hb_007188_030 0.1366882899 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
5 Hb_003656_150 0.1378603456 - - -
6 Hb_005107_020 0.1510640313 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
7 Hb_005679_070 0.1567959986 - - hypothetical protein M569_07741, partial [Genlisea aurea]
8 Hb_002079_040 0.1627694683 - - hypothetical protein VITISV_018542 [Vitis vinifera]
9 Hb_002078_500 0.1652141961 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007083_020 0.1678214015 - - hypothetical protein F775_15403 [Aegilops tauschii]
11 Hb_183522_010 0.1705259734 - - Far upstream element-binding protein, putative [Ricinus communis]
12 Hb_114079_010 0.1705659106 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
13 Hb_003371_170 0.1736613601 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002732_020 0.174453808 - - -
15 Hb_068014_010 0.1758845824 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
16 Hb_006198_090 0.1782049811 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
17 Hb_177103_010 0.1788701221 - - PREDICTED: histone H2AX [Elaeis guineensis]
18 Hb_012675_080 0.1809997644 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
19 Hb_000683_090 0.1834129752 - - stress enhanced protein [Medicago truncatula]
20 Hb_008096_020 0.1844201703 - - -

Gene co-expression network

sample Hb_003030_040 Hb_003030_040 Hb_002815_050 Hb_002815_050 Hb_003030_040--Hb_002815_050 Hb_031866_050 Hb_031866_050 Hb_003030_040--Hb_031866_050 Hb_007188_030 Hb_007188_030 Hb_003030_040--Hb_007188_030 Hb_003656_150 Hb_003656_150 Hb_003030_040--Hb_003656_150 Hb_005107_020 Hb_005107_020 Hb_003030_040--Hb_005107_020 Hb_005679_070 Hb_005679_070 Hb_003030_040--Hb_005679_070 Hb_002815_050--Hb_005679_070 Hb_002815_050--Hb_007188_030 Hb_002815_050--Hb_003656_150 Hb_022891_010 Hb_022891_010 Hb_002815_050--Hb_022891_010 Hb_068014_010 Hb_068014_010 Hb_002815_050--Hb_068014_010 Hb_007447_020 Hb_007447_020 Hb_031866_050--Hb_007447_020 Hb_031866_050--Hb_003656_150 Hb_031866_050--Hb_007188_030 Hb_000683_090 Hb_000683_090 Hb_031866_050--Hb_000683_090 Hb_177103_010 Hb_177103_010 Hb_031866_050--Hb_177103_010 Hb_007188_030--Hb_003656_150 Hb_006198_090 Hb_006198_090 Hb_007188_030--Hb_006198_090 Hb_007188_030--Hb_177103_010 Hb_007188_030--Hb_005679_070 Hb_006995_010 Hb_006995_010 Hb_003656_150--Hb_006995_010 Hb_012675_080 Hb_012675_080 Hb_003656_150--Hb_012675_080 Hb_003656_150--Hb_006198_090 Hb_003029_100 Hb_003029_100 Hb_003656_150--Hb_003029_100 Hb_000034_090 Hb_000034_090 Hb_005107_020--Hb_000034_090 Hb_006162_020 Hb_006162_020 Hb_005107_020--Hb_006162_020 Hb_006794_010 Hb_006794_010 Hb_005107_020--Hb_006794_010 Hb_005107_020--Hb_012675_080 Hb_011200_010 Hb_011200_010 Hb_005107_020--Hb_011200_010 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_001998_140 Hb_001998_140 Hb_005679_070--Hb_001998_140 Hb_005085_030 Hb_005085_030 Hb_005679_070--Hb_005085_030 Hb_005679_070--Hb_068014_010 Hb_006663_090 Hb_006663_090 Hb_005679_070--Hb_006663_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.59477 13.3637 6.21552 143.463 8.24178 197.862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8258 17.7971 15.4165 18.0804 25.794

CAGE analysis