Hb_003030_070

Information

Type -
Description -
Location Contig3030: 97000-102080
Sequence    

Annotation

kegg
ID rcu:RCOM_0845420
description hypothetical protein
nr
ID XP_012070340.1
description PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
swissprot
ID Q54YW1
description ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1
trembl
ID A0A067L543
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02640 PE=4 SV=1
Gene Ontology
ID GO:0009407
description elmo domain-containing protein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31973: 97089-102096 , PASA_asmbl_31975: 99574-99804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003030_070 0.0 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
2 Hb_001369_180 0.0462592159 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
3 Hb_003665_060 0.0557608532 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
4 Hb_000230_560 0.0560399297 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
5 Hb_002495_040 0.0601754296 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
6 Hb_007317_110 0.0637932119 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
7 Hb_002391_300 0.0668521727 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
8 Hb_012092_010 0.0671228036 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
9 Hb_007218_080 0.0673552921 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
10 Hb_000645_050 0.068838418 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
11 Hb_000618_040 0.0689534052 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
12 Hb_000879_200 0.0695186616 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
13 Hb_006620_020 0.0697536374 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
14 Hb_007594_130 0.0710647968 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
15 Hb_000451_010 0.0711589746 - - secretory carrier membrane protein, putative [Ricinus communis]
16 Hb_003125_160 0.0716644554 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
17 Hb_000465_430 0.0720903735 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
18 Hb_000010_330 0.0729209175 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
19 Hb_005618_160 0.0732467869 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
20 Hb_000085_160 0.073272403 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]

Gene co-expression network

sample Hb_003030_070 Hb_003030_070 Hb_001369_180 Hb_001369_180 Hb_003030_070--Hb_001369_180 Hb_003665_060 Hb_003665_060 Hb_003030_070--Hb_003665_060 Hb_000230_560 Hb_000230_560 Hb_003030_070--Hb_000230_560 Hb_002495_040 Hb_002495_040 Hb_003030_070--Hb_002495_040 Hb_007317_110 Hb_007317_110 Hb_003030_070--Hb_007317_110 Hb_002391_300 Hb_002391_300 Hb_003030_070--Hb_002391_300 Hb_007218_080 Hb_007218_080 Hb_001369_180--Hb_007218_080 Hb_001369_180--Hb_000230_560 Hb_001369_180--Hb_002495_040 Hb_007336_020 Hb_007336_020 Hb_001369_180--Hb_007336_020 Hb_004310_130 Hb_004310_130 Hb_001369_180--Hb_004310_130 Hb_000010_330 Hb_000010_330 Hb_003665_060--Hb_000010_330 Hb_003964_070 Hb_003964_070 Hb_003665_060--Hb_003964_070 Hb_003665_060--Hb_007317_110 Hb_003665_060--Hb_000230_560 Hb_000085_160 Hb_000085_160 Hb_003665_060--Hb_000085_160 Hb_002997_080 Hb_002997_080 Hb_000230_560--Hb_002997_080 Hb_000141_250 Hb_000141_250 Hb_000230_560--Hb_000141_250 Hb_007075_040 Hb_007075_040 Hb_000230_560--Hb_007075_040 Hb_000883_020 Hb_000883_020 Hb_000230_560--Hb_000883_020 Hb_000465_430 Hb_000465_430 Hb_002495_040--Hb_000465_430 Hb_012092_010 Hb_012092_010 Hb_002495_040--Hb_012092_010 Hb_000092_100 Hb_000092_100 Hb_002495_040--Hb_000092_100 Hb_001936_080 Hb_001936_080 Hb_002495_040--Hb_001936_080 Hb_006827_020 Hb_006827_020 Hb_007317_110--Hb_006827_020 Hb_007317_110--Hb_000085_160 Hb_000808_270 Hb_000808_270 Hb_007317_110--Hb_000808_270 Hb_007317_110--Hb_003964_070 Hb_007059_010 Hb_007059_010 Hb_007317_110--Hb_007059_010 Hb_000373_240 Hb_000373_240 Hb_002391_300--Hb_000373_240 Hb_003406_010 Hb_003406_010 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_002391_300--Hb_012092_010 Hb_002391_300--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.178 15.7007 21.531 22.8318 36.9923 40.7077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.6845 30.515 23.0488 16.1988 15.7956

CAGE analysis