Hb_003030_080

Information

Type -
Description -
Location Contig3030: 110734-117715
Sequence    

Annotation

kegg
ID rcu:RCOM_0845390
description multidrug resistance pump, putative
nr
ID XP_002530958.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9SY89
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0845390 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003030_080 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_001606_070 0.0955241403 - - fimbrin, putative [Ricinus communis]
3 Hb_000249_130 0.103159664 - - hypothetical protein RCOM_0254640 [Ricinus communis]
4 Hb_001396_230 0.1123414771 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
5 Hb_003497_030 0.1201739731 - - ADP-ribosylation factor, putative [Ricinus communis]
6 Hb_000849_040 0.1231844092 - - transcription factor, putative [Ricinus communis]
7 Hb_005779_100 0.123601205 - - DNAJ [Theobroma cacao]
8 Hb_024952_010 0.1336810539 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
9 Hb_004800_160 0.1340512682 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
10 Hb_000304_020 0.1342516888 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
11 Hb_114684_020 0.1365434741 - - beta-1,3-glucanase [Hevea brasiliensis]
12 Hb_000567_250 0.1379525675 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
13 Hb_004882_020 0.1394450661 - - -
14 Hb_001767_010 0.1396746304 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
15 Hb_143629_090 0.141146055 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
16 Hb_002357_040 0.1428194369 - - latex-abundant protein [Hevea brasiliensis]
17 Hb_000387_080 0.1435473461 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
18 Hb_000442_030 0.1442135967 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001366_220 0.1452964163 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001141_470 0.1458858256 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]

Gene co-expression network

sample Hb_003030_080 Hb_003030_080 Hb_001606_070 Hb_001606_070 Hb_003030_080--Hb_001606_070 Hb_000249_130 Hb_000249_130 Hb_003030_080--Hb_000249_130 Hb_001396_230 Hb_001396_230 Hb_003030_080--Hb_001396_230 Hb_003497_030 Hb_003497_030 Hb_003030_080--Hb_003497_030 Hb_000849_040 Hb_000849_040 Hb_003030_080--Hb_000849_040 Hb_005779_100 Hb_005779_100 Hb_003030_080--Hb_005779_100 Hb_001606_070--Hb_000849_040 Hb_001606_070--Hb_005779_100 Hb_000427_110 Hb_000427_110 Hb_001606_070--Hb_000427_110 Hb_006787_040 Hb_006787_040 Hb_001606_070--Hb_006787_040 Hb_000861_040 Hb_000861_040 Hb_001606_070--Hb_000861_040 Hb_143629_090 Hb_143629_090 Hb_000249_130--Hb_143629_090 Hb_000249_130--Hb_003497_030 Hb_024952_010 Hb_024952_010 Hb_000249_130--Hb_024952_010 Hb_000249_130--Hb_001606_070 Hb_000380_180 Hb_000380_180 Hb_000249_130--Hb_000380_180 Hb_001396_230--Hb_005779_100 Hb_001396_230--Hb_024952_010 Hb_008085_040 Hb_008085_040 Hb_001396_230--Hb_008085_040 Hb_002739_110 Hb_002739_110 Hb_001396_230--Hb_002739_110 Hb_001396_230--Hb_001606_070 Hb_003497_030--Hb_000380_180 Hb_003497_030--Hb_001606_070 Hb_002357_040 Hb_002357_040 Hb_003497_030--Hb_002357_040 Hb_027751_020 Hb_027751_020 Hb_003497_030--Hb_027751_020 Hb_000260_060 Hb_000260_060 Hb_003497_030--Hb_000260_060 Hb_002835_170 Hb_002835_170 Hb_003497_030--Hb_002835_170 Hb_000442_030 Hb_000442_030 Hb_000849_040--Hb_000442_030 Hb_000849_040--Hb_006787_040 Hb_000304_020 Hb_000304_020 Hb_000849_040--Hb_000304_020 Hb_024505_040 Hb_024505_040 Hb_000849_040--Hb_024505_040 Hb_000387_080 Hb_000387_080 Hb_000849_040--Hb_000387_080 Hb_002154_050 Hb_002154_050 Hb_005779_100--Hb_002154_050 Hb_006602_020 Hb_006602_020 Hb_005779_100--Hb_006602_020 Hb_006602_010 Hb_006602_010 Hb_005779_100--Hb_006602_010 Hb_005779_100--Hb_002357_040 Hb_001473_130 Hb_001473_130 Hb_005779_100--Hb_001473_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6874 0.500316 0.023701 0.376155 8.27723 9.77139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.541 7.65145 22.1748 3.80336 0.507211

CAGE analysis