Hb_003032_030

Information

Type transcription factor
Description TF Family: G2-like
Location Contig3032: 36841-39199
Sequence    

Annotation

kegg
ID rcu:RCOM_0825660
description hypothetical protein
nr
ID XP_012078695.1
description PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
swissprot
ID Q94DH3
description Transcription factor PCL1 OS=Oryza sativa subsp. japonica GN=PCL1 PE=2 SV=1
trembl
ID A0A067KBG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13263 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31989: 36977-37728 , PASA_asmbl_31990: 37879-38679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003032_030 0.0 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
2 Hb_000620_040 0.0512825137 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
3 Hb_015934_090 0.0764740118 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
4 Hb_147006_010 0.0799134217 - - receptor like protein 35 [Arabidopsis thaliana]
5 Hb_020375_010 0.0892748624 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
6 Hb_009023_010 0.0918310689 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
7 Hb_000749_300 0.0930189433 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
8 Hb_002986_030 0.093439127 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
9 Hb_000270_380 0.0951685825 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
10 Hb_002485_010 0.095398337 - - PREDICTED: extensin [Jatropha curcas]
11 Hb_001512_130 0.0954921015 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
12 Hb_003893_130 0.0961914018 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_015561_010 0.0973424979 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001902_040 0.0974215307 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000000_050 0.1007168122 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010164_030 0.1031038307 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
17 Hb_012098_160 0.1035938049 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
18 Hb_133974_010 0.1038298417 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
19 Hb_001268_150 0.1065732814 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_185726_010 0.1070548456 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_003032_030 Hb_003032_030 Hb_000620_040 Hb_000620_040 Hb_003032_030--Hb_000620_040 Hb_015934_090 Hb_015934_090 Hb_003032_030--Hb_015934_090 Hb_147006_010 Hb_147006_010 Hb_003032_030--Hb_147006_010 Hb_020375_010 Hb_020375_010 Hb_003032_030--Hb_020375_010 Hb_009023_010 Hb_009023_010 Hb_003032_030--Hb_009023_010 Hb_000749_300 Hb_000749_300 Hb_003032_030--Hb_000749_300 Hb_000620_040--Hb_147006_010 Hb_000620_040--Hb_015934_090 Hb_003893_130 Hb_003893_130 Hb_000620_040--Hb_003893_130 Hb_010164_030 Hb_010164_030 Hb_000620_040--Hb_010164_030 Hb_000620_040--Hb_020375_010 Hb_015934_090--Hb_000749_300 Hb_015934_090--Hb_147006_010 Hb_163950_050 Hb_163950_050 Hb_015934_090--Hb_163950_050 Hb_002986_030 Hb_002986_030 Hb_015934_090--Hb_002986_030 Hb_147006_010--Hb_010164_030 Hb_133974_010 Hb_133974_010 Hb_147006_010--Hb_133974_010 Hb_004032_290 Hb_004032_290 Hb_147006_010--Hb_004032_290 Hb_000077_250 Hb_000077_250 Hb_020375_010--Hb_000077_250 Hb_000000_050 Hb_000000_050 Hb_020375_010--Hb_000000_050 Hb_000813_070 Hb_000813_070 Hb_020375_010--Hb_000813_070 Hb_009522_010 Hb_009522_010 Hb_020375_010--Hb_009522_010 Hb_004787_120 Hb_004787_120 Hb_020375_010--Hb_004787_120 Hb_000270_380 Hb_000270_380 Hb_009023_010--Hb_000270_380 Hb_015561_010 Hb_015561_010 Hb_009023_010--Hb_015561_010 Hb_005762_010 Hb_005762_010 Hb_009023_010--Hb_005762_010 Hb_002062_010 Hb_002062_010 Hb_009023_010--Hb_002062_010 Hb_012098_160 Hb_012098_160 Hb_009023_010--Hb_012098_160 Hb_001512_130 Hb_001512_130 Hb_009023_010--Hb_001512_130 Hb_001902_040 Hb_001902_040 Hb_000749_300--Hb_001902_040 Hb_000749_300--Hb_002986_030 Hb_000083_210 Hb_000083_210 Hb_000749_300--Hb_000083_210 Hb_185726_010 Hb_185726_010 Hb_000749_300--Hb_185726_010 Hb_000462_010 Hb_000462_010 Hb_000749_300--Hb_000462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.53849 3.1606 7.75531 0.0718478 0.0804267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0287774 0 0 0.171548 5.89016

CAGE analysis