Hb_003032_100

Information

Type -
Description -
Location Contig3032: 121128-121589
Sequence    

Annotation

kegg
ID rcu:RCOM_0826170
description GDP-mannose transporter, putative
nr
ID XP_012078702.1
description PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
swissprot
ID Q84L08
description GDP-mannose transporter GONST4 OS=Arabidopsis thaliana GN=GONST4 PE=2 SV=1
trembl
ID A0A067KBG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13268 PE=4 SV=1
Gene Ontology
ID GO:0005794
description gdp-mannose transporter gonst4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003032_100 0.0 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
2 Hb_005671_020 0.1686654846 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
3 Hb_002067_100 0.1975463894 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000161_150 0.2137807007 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
5 Hb_003913_080 0.2184004166 - - rpl27A [Hemiselmis andersenii]
6 Hb_000227_200 0.2209296896 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
7 Hb_000172_570 0.2211714022 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
8 Hb_067793_010 0.2271326182 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
9 Hb_001587_210 0.2284798207 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
10 Hb_001504_140 0.2301787726 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
11 Hb_002078_480 0.2334784226 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]
12 Hb_004032_260 0.2376726617 - - PREDICTED: uncharacterized protein LOC105635147 [Jatropha curcas]
13 Hb_017434_050 0.2391510124 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
14 Hb_000010_410 0.2420682419 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
15 Hb_009314_010 0.2441259886 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_000141_030 0.2451097311 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
17 Hb_003086_130 0.2472809592 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_011316_060 0.2485561092 - - alpha-l-fucosidase, putative [Ricinus communis]
19 Hb_000963_140 0.2512467936 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_144484_010 0.2514630975 - - calcineurin-like phosphoesterase [Manihot esculenta]

Gene co-expression network

sample Hb_003032_100 Hb_003032_100 Hb_005671_020 Hb_005671_020 Hb_003032_100--Hb_005671_020 Hb_002067_100 Hb_002067_100 Hb_003032_100--Hb_002067_100 Hb_000161_150 Hb_000161_150 Hb_003032_100--Hb_000161_150 Hb_003913_080 Hb_003913_080 Hb_003032_100--Hb_003913_080 Hb_000227_200 Hb_000227_200 Hb_003032_100--Hb_000227_200 Hb_000172_570 Hb_000172_570 Hb_003032_100--Hb_000172_570 Hb_001096_030 Hb_001096_030 Hb_005671_020--Hb_001096_030 Hb_005671_020--Hb_000161_150 Hb_000723_190 Hb_000723_190 Hb_005671_020--Hb_000723_190 Hb_000010_410 Hb_000010_410 Hb_005671_020--Hb_000010_410 Hb_001232_140 Hb_001232_140 Hb_005671_020--Hb_001232_140 Hb_000012_230 Hb_000012_230 Hb_002067_100--Hb_000012_230 Hb_004333_030 Hb_004333_030 Hb_002067_100--Hb_004333_030 Hb_000896_120 Hb_000896_120 Hb_002067_100--Hb_000896_120 Hb_088202_010 Hb_088202_010 Hb_002067_100--Hb_088202_010 Hb_000115_050 Hb_000115_050 Hb_002067_100--Hb_000115_050 Hb_009314_010 Hb_009314_010 Hb_000161_150--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000161_150--Hb_000771_130 Hb_002756_020 Hb_002756_020 Hb_000161_150--Hb_002756_020 Hb_000316_020 Hb_000316_020 Hb_000161_150--Hb_000316_020 Hb_000141_030 Hb_000141_030 Hb_000161_150--Hb_000141_030 Hb_000432_050 Hb_000432_050 Hb_000161_150--Hb_000432_050 Hb_003913_080--Hb_000161_150 Hb_001776_170 Hb_001776_170 Hb_003913_080--Hb_001776_170 Hb_004064_020 Hb_004064_020 Hb_003913_080--Hb_004064_020 Hb_002151_050 Hb_002151_050 Hb_003913_080--Hb_002151_050 Hb_003913_080--Hb_005671_020 Hb_003913_080--Hb_000010_410 Hb_000784_040 Hb_000784_040 Hb_000227_200--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_000227_200--Hb_001587_210 Hb_005914_070 Hb_005914_070 Hb_000227_200--Hb_005914_070 Hb_001741_040 Hb_001741_040 Hb_000227_200--Hb_001741_040 Hb_091433_040 Hb_091433_040 Hb_000227_200--Hb_091433_040 Hb_042223_010 Hb_042223_010 Hb_000227_200--Hb_042223_010 Hb_002073_120 Hb_002073_120 Hb_000172_570--Hb_002073_120 Hb_000172_570--Hb_000227_200 Hb_000172_570--Hb_000141_030 Hb_003599_070 Hb_003599_070 Hb_000172_570--Hb_003599_070 Hb_000995_070 Hb_000995_070 Hb_000172_570--Hb_000995_070 Hb_000172_570--Hb_000784_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.605659 0.0681224 0 1.35265 0 0.256237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45311 2.52909 6.41565 1.2621 0

CAGE analysis