Hb_003033_020

Information

Type -
Description -
Location Contig3033: 25844-29725
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24030g
description POPTRDRAFT_833893; 4-mannan synthase family protein
nr
ID XP_012090002.1
description PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
swissprot
ID Q9LZR3
description Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1
trembl
ID A0A067LK14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01530 PE=4 SV=1
Gene Ontology
ID GO:0047259
description glucomannan 4-beta-mannosyltransferase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32013: 27861-28822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003033_020 0.0 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
2 Hb_006573_240 0.0434890719 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
3 Hb_001191_060 0.0553735314 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
4 Hb_003186_030 0.0578143675 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
5 Hb_010697_020 0.064197066 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003787_030 0.0663644911 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000307_100 0.0670572202 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
8 Hb_002301_070 0.0678314456 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001348_160 0.0695944953 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_000928_260 0.0724441002 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
11 Hb_001310_020 0.0735643173 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
12 Hb_002809_030 0.0762320094 - - conserved hypothetical protein [Ricinus communis]
13 Hb_131466_010 0.0767439212 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
14 Hb_002042_210 0.0786322881 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
15 Hb_000046_400 0.0788278171 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000221_130 0.0811279739 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
17 Hb_029991_010 0.0830430479 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
18 Hb_029879_020 0.0832758266 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
19 Hb_000098_040 0.0857549163 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
20 Hb_000012_370 0.0879690029 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003033_020 Hb_003033_020 Hb_006573_240 Hb_006573_240 Hb_003033_020--Hb_006573_240 Hb_001191_060 Hb_001191_060 Hb_003033_020--Hb_001191_060 Hb_003186_030 Hb_003186_030 Hb_003033_020--Hb_003186_030 Hb_010697_020 Hb_010697_020 Hb_003033_020--Hb_010697_020 Hb_003787_030 Hb_003787_030 Hb_003033_020--Hb_003787_030 Hb_000307_100 Hb_000307_100 Hb_003033_020--Hb_000307_100 Hb_006573_240--Hb_003787_030 Hb_000928_260 Hb_000928_260 Hb_006573_240--Hb_000928_260 Hb_002301_070 Hb_002301_070 Hb_006573_240--Hb_002301_070 Hb_002329_050 Hb_002329_050 Hb_006573_240--Hb_002329_050 Hb_006573_240--Hb_000307_100 Hb_001310_020 Hb_001310_020 Hb_001191_060--Hb_001310_020 Hb_001348_160 Hb_001348_160 Hb_001191_060--Hb_001348_160 Hb_001269_480 Hb_001269_480 Hb_001191_060--Hb_001269_480 Hb_000012_370 Hb_000012_370 Hb_001191_060--Hb_000012_370 Hb_002818_130 Hb_002818_130 Hb_001191_060--Hb_002818_130 Hb_004452_070 Hb_004452_070 Hb_003186_030--Hb_004452_070 Hb_000251_150 Hb_000251_150 Hb_003186_030--Hb_000251_150 Hb_006132_080 Hb_006132_080 Hb_003186_030--Hb_006132_080 Hb_003186_030--Hb_001191_060 Hb_003186_030--Hb_001348_160 Hb_010697_020--Hb_001348_160 Hb_010697_020--Hb_002301_070 Hb_010697_020--Hb_003787_030 Hb_010697_020--Hb_000928_260 Hb_010697_020--Hb_001191_060 Hb_010697_020--Hb_001269_480 Hb_003787_030--Hb_002301_070 Hb_003787_030--Hb_000928_260 Hb_000815_120 Hb_000815_120 Hb_003787_030--Hb_000815_120 Hb_004143_080 Hb_004143_080 Hb_003787_030--Hb_004143_080 Hb_000098_040 Hb_000098_040 Hb_000307_100--Hb_000098_040 Hb_000329_430 Hb_000329_430 Hb_000307_100--Hb_000329_430 Hb_002809_030 Hb_002809_030 Hb_000307_100--Hb_002809_030 Hb_000352_230 Hb_000352_230 Hb_000307_100--Hb_000352_230 Hb_009771_090 Hb_009771_090 Hb_000307_100--Hb_009771_090 Hb_000307_100--Hb_010697_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.190381 4.54895 3.83513 0.0121264 0.0119181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.129597 14.6187

CAGE analysis