Hb_003038_020

Information

Type -
Description -
Location Contig3038: 15308-16645
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13020g
description POPTRDRAFT_219279; hypothetical protein
nr
ID CDP02008.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q93VJ4
description Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1
trembl
ID A0A068U318
description Coffea canephora DH200=94 genomic scaffold, scaffold_7 OS=Coffea canephora GN=GSCOC_T00037213001 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor hbi1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32029: 16020-16441
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_020 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_003687_060 0.0007264983 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005333_090 0.0007584346 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
4 Hb_004899_240 0.0040539971 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005356_020 0.0044346197 - - glutaredoxin, grx, putative [Ricinus communis]
6 Hb_001552_010 0.0051639886 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002157_110 0.0071238676 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
8 Hb_010128_140 0.0086356168 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
9 Hb_003849_210 0.0111812963 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
10 Hb_036116_010 0.0124896165 - - JHL22C18.10 [Jatropha curcas]
11 Hb_090521_010 0.0142000468 - - Major allergen Pru ar, putative [Ricinus communis]
12 Hb_000471_130 0.0166778575 - - conserved hypothetical protein [Ricinus communis]
13 Hb_015447_010 0.0174516806 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
14 Hb_002217_010 0.0175718535 - - Peroxiredoxin, putative [Ricinus communis]
15 Hb_006198_160 0.0196610283 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
16 Hb_001002_010 0.022491841 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006663_120 0.0236954808 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000679_180 0.0239924601 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
19 Hb_007227_020 0.0244114239 - - -
20 Hb_101724_010 0.024924003 - - glutamate receptor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003038_020 Hb_003038_020 Hb_003687_060 Hb_003687_060 Hb_003038_020--Hb_003687_060 Hb_005333_090 Hb_005333_090 Hb_003038_020--Hb_005333_090 Hb_004899_240 Hb_004899_240 Hb_003038_020--Hb_004899_240 Hb_005356_020 Hb_005356_020 Hb_003038_020--Hb_005356_020 Hb_001552_010 Hb_001552_010 Hb_003038_020--Hb_001552_010 Hb_002157_110 Hb_002157_110 Hb_003038_020--Hb_002157_110 Hb_003687_060--Hb_005333_090 Hb_003687_060--Hb_005356_020 Hb_003687_060--Hb_001552_010 Hb_003687_060--Hb_004899_240 Hb_003687_060--Hb_002157_110 Hb_005333_090--Hb_004899_240 Hb_005333_090--Hb_005356_020 Hb_005333_090--Hb_001552_010 Hb_005333_090--Hb_002157_110 Hb_004899_240--Hb_002157_110 Hb_036116_010 Hb_036116_010 Hb_004899_240--Hb_036116_010 Hb_004899_240--Hb_005356_020 Hb_005356_020--Hb_001552_010 Hb_010128_140 Hb_010128_140 Hb_005356_020--Hb_010128_140 Hb_003849_210 Hb_003849_210 Hb_005356_020--Hb_003849_210 Hb_001552_010--Hb_010128_140 Hb_001552_010--Hb_003849_210 Hb_002157_110--Hb_036116_010 Hb_090521_010 Hb_090521_010 Hb_002157_110--Hb_090521_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.235213 1.67212 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis