Hb_003038_030

Information

Type -
Description -
Location Contig3038: 17896-21660
Sequence    

Annotation

kegg
ID cmo:103502676
description anaphase-promoting complex subunit 10
nr
ID XP_008464918.1
description PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
swissprot
ID Q9ZPW2
description Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=APC10 PE=1 SV=2
trembl
ID B9S6F0
description Anaphase-promoting complex subunit 10 OS=Ricinus communis GN=RCOM_0535960 PE=3 SV=1
Gene Ontology
ID GO:0005680
description anaphase-promoting complex subunit 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32030: 18291-19223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_030 0.0 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
2 Hb_148912_010 0.0500565486 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002411_170 0.0613135801 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
4 Hb_141131_010 0.062953311 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
5 Hb_000019_230 0.0660296206 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
6 Hb_000172_370 0.0711657764 - - -
7 Hb_004545_060 0.0712002271 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
8 Hb_125000_010 0.0747350607 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
9 Hb_004944_010 0.0751123305 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
10 Hb_004195_160 0.0762240877 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
11 Hb_000349_060 0.0768829969 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_000386_040 0.0779431391 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_003120_060 0.0795008875 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
14 Hb_009767_120 0.080360381 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
15 Hb_000188_100 0.0812883234 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
16 Hb_079820_010 0.0816507715 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
17 Hb_003005_020 0.0818328942 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
18 Hb_004440_050 0.0821927278 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
19 Hb_000780_060 0.0823514587 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
20 Hb_000749_150 0.0834109274 - - -

Gene co-expression network

sample Hb_003038_030 Hb_003038_030 Hb_148912_010 Hb_148912_010 Hb_003038_030--Hb_148912_010 Hb_002411_170 Hb_002411_170 Hb_003038_030--Hb_002411_170 Hb_141131_010 Hb_141131_010 Hb_003038_030--Hb_141131_010 Hb_000019_230 Hb_000019_230 Hb_003038_030--Hb_000019_230 Hb_000172_370 Hb_000172_370 Hb_003038_030--Hb_000172_370 Hb_004545_060 Hb_004545_060 Hb_003038_030--Hb_004545_060 Hb_148912_010--Hb_000172_370 Hb_148912_010--Hb_002411_170 Hb_063716_050 Hb_063716_050 Hb_148912_010--Hb_063716_050 Hb_000395_170 Hb_000395_170 Hb_148912_010--Hb_000395_170 Hb_125000_010 Hb_125000_010 Hb_148912_010--Hb_125000_010 Hb_004440_050 Hb_004440_050 Hb_002411_170--Hb_004440_050 Hb_002411_170--Hb_125000_010 Hb_010180_020 Hb_010180_020 Hb_002411_170--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_002411_170--Hb_001604_080 Hb_004944_010 Hb_004944_010 Hb_141131_010--Hb_004944_010 Hb_001124_210 Hb_001124_210 Hb_141131_010--Hb_001124_210 Hb_000620_080 Hb_000620_080 Hb_141131_010--Hb_000620_080 Hb_141131_010--Hb_004545_060 Hb_002217_310 Hb_002217_310 Hb_141131_010--Hb_002217_310 Hb_003551_020 Hb_003551_020 Hb_000019_230--Hb_003551_020 Hb_003120_060 Hb_003120_060 Hb_000019_230--Hb_003120_060 Hb_000188_100 Hb_000188_100 Hb_000019_230--Hb_000188_100 Hb_000977_080 Hb_000977_080 Hb_000019_230--Hb_000977_080 Hb_004195_160 Hb_004195_160 Hb_000019_230--Hb_004195_160 Hb_003005_020 Hb_003005_020 Hb_000172_370--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_000172_370--Hb_010436_070 Hb_118419_020 Hb_118419_020 Hb_000172_370--Hb_118419_020 Hb_000172_370--Hb_004195_160 Hb_004545_060--Hb_010180_020 Hb_000045_090 Hb_000045_090 Hb_004545_060--Hb_000045_090 Hb_002078_150 Hb_002078_150 Hb_004545_060--Hb_002078_150 Hb_000103_560 Hb_000103_560 Hb_004545_060--Hb_000103_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.858 7.45499 8.5067 11.0787 24.3657 33.5726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0363 28.8298 19.8118 6.31547 3.87355

CAGE analysis