Hb_003038_060

Information

Type -
Description -
Location Contig3038: 31551-34371
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13050g
description POPTRDRAFT_870206; hypothetical protein
nr
ID XP_002310245.1
description hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
swissprot
ID Q8VZA1
description Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1
trembl
ID B9HF21
description Laccase OS=Populus trichocarpa GN=POPTR_0007s13050g PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32033: 33440-33634 , PASA_asmbl_32034: 33675-34279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_060 0.0 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
2 Hb_001717_060 0.0503417185 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
3 Hb_000230_420 0.0636712362 - - GS [Hevea brasiliensis subsp. brasiliensis]
4 Hb_001862_040 0.0654800317 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
5 Hb_013405_110 0.0658815804 - - multidrug resistance pump, putative [Ricinus communis]
6 Hb_002785_040 0.0665911991 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
7 Hb_000531_100 0.0666064867 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
8 Hb_003747_090 0.0673050875 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_000083_180 0.0673701849 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
10 Hb_005276_080 0.068248969 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
11 Hb_003032_080 0.0686906723 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000948_240 0.0709478524 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001006_160 0.0731313748 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
14 Hb_003050_380 0.0739445927 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
15 Hb_010288_070 0.0745810675 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
16 Hb_002592_040 0.0749169051 - - ACC oxidase 3 [Hevea brasiliensis]
17 Hb_005280_020 0.0756152399 - - glycine cleavage system h protein, putative [Ricinus communis]
18 Hb_004048_080 0.0756210906 - - hypothetical protein POPTR_0001s40360g [Populus trichocarpa]
19 Hb_163566_020 0.0758424996 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_005375_090 0.0780047547 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003038_060 Hb_003038_060 Hb_001717_060 Hb_001717_060 Hb_003038_060--Hb_001717_060 Hb_000230_420 Hb_000230_420 Hb_003038_060--Hb_000230_420 Hb_001862_040 Hb_001862_040 Hb_003038_060--Hb_001862_040 Hb_013405_110 Hb_013405_110 Hb_003038_060--Hb_013405_110 Hb_002785_040 Hb_002785_040 Hb_003038_060--Hb_002785_040 Hb_000531_100 Hb_000531_100 Hb_003038_060--Hb_000531_100 Hb_005754_050 Hb_005754_050 Hb_001717_060--Hb_005754_050 Hb_001717_060--Hb_000531_100 Hb_005280_020 Hb_005280_020 Hb_001717_060--Hb_005280_020 Hb_013726_060 Hb_013726_060 Hb_001717_060--Hb_013726_060 Hb_002818_110 Hb_002818_110 Hb_001717_060--Hb_002818_110 Hb_001292_030 Hb_001292_030 Hb_000230_420--Hb_001292_030 Hb_000230_420--Hb_000531_100 Hb_002534_020 Hb_002534_020 Hb_000230_420--Hb_002534_020 Hb_000083_180 Hb_000083_180 Hb_000230_420--Hb_000083_180 Hb_001277_350 Hb_001277_350 Hb_000230_420--Hb_001277_350 Hb_003032_080 Hb_003032_080 Hb_001862_040--Hb_003032_080 Hb_082402_020 Hb_082402_020 Hb_001862_040--Hb_082402_020 Hb_000948_240 Hb_000948_240 Hb_001862_040--Hb_000948_240 Hb_002890_170 Hb_002890_170 Hb_001862_040--Hb_002890_170 Hb_002014_150 Hb_002014_150 Hb_001862_040--Hb_002014_150 Hb_003050_380 Hb_003050_380 Hb_001862_040--Hb_003050_380 Hb_003747_090 Hb_003747_090 Hb_013405_110--Hb_003747_090 Hb_013405_110--Hb_002785_040 Hb_005375_090 Hb_005375_090 Hb_013405_110--Hb_005375_090 Hb_002400_200 Hb_002400_200 Hb_013405_110--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_013405_110--Hb_000703_340 Hb_002592_040 Hb_002592_040 Hb_013405_110--Hb_002592_040 Hb_002785_040--Hb_003747_090 Hb_002785_040--Hb_005375_090 Hb_086022_020 Hb_086022_020 Hb_002785_040--Hb_086022_020 Hb_004129_170 Hb_004129_170 Hb_002785_040--Hb_004129_170 Hb_000320_370 Hb_000320_370 Hb_002785_040--Hb_000320_370 Hb_000531_100--Hb_013726_060 Hb_000531_100--Hb_001292_030 Hb_002529_120 Hb_002529_120 Hb_000531_100--Hb_002529_120 Hb_001322_120 Hb_001322_120 Hb_000531_100--Hb_001322_120 Hb_005276_080 Hb_005276_080 Hb_000531_100--Hb_005276_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.12096 7.01745 1.93868 0.0389998 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 10.6609

CAGE analysis