Hb_003038_100

Information

Type -
Description -
Location Contig3038: 55163-58891
Sequence    

Annotation

kegg
ID rcu:RCOM_0535590
description alpha/beta hydrolase, putative (EC:3.1.1.1)
nr
ID XP_012079660.1
description PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
swissprot
ID Q9FFZ1
description Pheophytinase, chloroplastic OS=Arabidopsis thaliana GN=PPH PE=1 SV=1
trembl
ID A0A067K5Z2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14962 PE=4 SV=1
Gene Ontology
ID GO:0009941
description chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32037: 55296-58847
cDNA
(Sanger)
(ID:Location)		 043_D11.ab1: 55296-56558

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_100 0.0 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
2 Hb_027472_100 0.1115535704 - - PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]
3 Hb_000005_130 0.1199059767 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
4 Hb_011114_020 0.1202732797 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
5 Hb_005914_050 0.1244890045 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
6 Hb_002150_130 0.1268858447 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
7 Hb_004117_040 0.1287090732 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
8 Hb_023732_050 0.1308653466 - - aldo-keto reductase, putative [Ricinus communis]
9 Hb_007426_170 0.1318021924 transcription factor TF Family: TCP -
10 Hb_012545_040 0.1339459403 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000000_180 0.1358288685 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
12 Hb_006620_070 0.1390727151 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
13 Hb_001519_170 0.1398082735 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
14 Hb_001124_190 0.1428277081 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004459_060 0.1449499488 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
16 Hb_001405_090 0.145614818 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
17 Hb_001863_120 0.1472717658 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
18 Hb_000152_480 0.1484785618 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
19 Hb_000146_030 0.1487539079 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
20 Hb_000627_300 0.1521559265 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]

Gene co-expression network

sample Hb_003038_100 Hb_003038_100 Hb_027472_100 Hb_027472_100 Hb_003038_100--Hb_027472_100 Hb_000005_130 Hb_000005_130 Hb_003038_100--Hb_000005_130 Hb_011114_020 Hb_011114_020 Hb_003038_100--Hb_011114_020 Hb_005914_050 Hb_005914_050 Hb_003038_100--Hb_005914_050 Hb_002150_130 Hb_002150_130 Hb_003038_100--Hb_002150_130 Hb_004117_040 Hb_004117_040 Hb_003038_100--Hb_004117_040 Hb_001863_120 Hb_001863_120 Hb_027472_100--Hb_001863_120 Hb_001946_160 Hb_001946_160 Hb_027472_100--Hb_001946_160 Hb_003813_020 Hb_003813_020 Hb_027472_100--Hb_003813_020 Hb_021650_040 Hb_021650_040 Hb_027472_100--Hb_021650_040 Hb_009252_060 Hb_009252_060 Hb_027472_100--Hb_009252_060 Hb_006829_080 Hb_006829_080 Hb_000005_130--Hb_006829_080 Hb_007426_170 Hb_007426_170 Hb_000005_130--Hb_007426_170 Hb_007694_060 Hb_007694_060 Hb_000005_130--Hb_007694_060 Hb_000802_050 Hb_000802_050 Hb_000005_130--Hb_000802_050 Hb_006620_070 Hb_006620_070 Hb_000005_130--Hb_006620_070 Hb_001959_060 Hb_001959_060 Hb_000005_130--Hb_001959_060 Hb_000368_120 Hb_000368_120 Hb_011114_020--Hb_000368_120 Hb_002411_100 Hb_002411_100 Hb_011114_020--Hb_002411_100 Hb_011114_020--Hb_000005_130 Hb_000442_070 Hb_000442_070 Hb_011114_020--Hb_000442_070 Hb_011114_020--Hb_006620_070 Hb_000146_030 Hb_000146_030 Hb_011114_020--Hb_000146_030 Hb_005914_050--Hb_002150_130 Hb_003209_010 Hb_003209_010 Hb_005914_050--Hb_003209_010 Hb_012545_040 Hb_012545_040 Hb_005914_050--Hb_012545_040 Hb_001124_190 Hb_001124_190 Hb_005914_050--Hb_001124_190 Hb_000176_010 Hb_000176_010 Hb_005914_050--Hb_000176_010 Hb_000676_020 Hb_000676_020 Hb_005914_050--Hb_000676_020 Hb_000042_290 Hb_000042_290 Hb_002150_130--Hb_000042_290 Hb_002150_130--Hb_000176_010 Hb_000627_300 Hb_000627_300 Hb_002150_130--Hb_000627_300 Hb_009178_070 Hb_009178_070 Hb_002150_130--Hb_009178_070 Hb_002150_130--Hb_004117_040 Hb_004117_040--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_004117_040--Hb_172632_060 Hb_004117_040--Hb_001959_060 Hb_005333_200 Hb_005333_200 Hb_004117_040--Hb_005333_200 Hb_002986_090 Hb_002986_090 Hb_004117_040--Hb_002986_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.732903 0.45153 4.87561 1.38967 0.192451 0.53202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18902 2.16205 0.431855 0.356166 4.41738

CAGE analysis