Hb_003038_110

Information

Type -
Description -
Location Contig3038: 59606-63533
Sequence    

Annotation

kegg
ID rcu:RCOM_0535580
description replication factor C / DNA polymerase III gamma-tau subunit, putative
nr
ID KDP31645.1
description hypothetical protein JCGZ_14961 [Jatropha curcas]
swissprot
ID Q8VXX4
description Replication factor C subunit 3 OS=Arabidopsis thaliana GN=RFC3 PE=2 SV=1
trembl
ID A0A067KHB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14961 PE=4 SV=1
Gene Ontology
ID GO:0003677
description replication factor c dna polymerase iii gamma-tau

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32037: 55296-58847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_110 0.0 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
2 Hb_000046_520 0.1467984466 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
3 Hb_001022_020 0.1681430981 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
4 Hb_015531_010 0.1775469037 - - PREDICTED: uncharacterized protein LOC105636764 [Jatropha curcas]
5 Hb_001396_040 0.1830125293 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
6 Hb_000134_260 0.1863520061 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_002374_200 0.19045853 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
8 Hb_004201_040 0.1905030035 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
9 Hb_000322_160 0.1921944436 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2-like [Jatropha curcas]
10 Hb_003058_030 0.1975256462 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_000308_010 0.20431047 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
12 Hb_000140_250 0.20493607 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
13 Hb_001638_120 0.2087074883 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
14 Hb_008775_030 0.2122082228 - - PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Jatropha curcas]
15 Hb_001025_140 0.2130943283 - - hypothetical protein POPTR_0015s09180g [Populus trichocarpa]
16 Hb_011918_030 0.2169530763 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
17 Hb_000866_430 0.2170171372 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
18 Hb_107078_010 0.2176074156 - - -
19 Hb_002477_200 0.2177715222 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
20 Hb_004109_250 0.2188229945 - - unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_003038_110 Hb_003038_110 Hb_000046_520 Hb_000046_520 Hb_003038_110--Hb_000046_520 Hb_001022_020 Hb_001022_020 Hb_003038_110--Hb_001022_020 Hb_015531_010 Hb_015531_010 Hb_003038_110--Hb_015531_010 Hb_001396_040 Hb_001396_040 Hb_003038_110--Hb_001396_040 Hb_000134_260 Hb_000134_260 Hb_003038_110--Hb_000134_260 Hb_002374_200 Hb_002374_200 Hb_003038_110--Hb_002374_200 Hb_008775_030 Hb_008775_030 Hb_000046_520--Hb_008775_030 Hb_107078_010 Hb_107078_010 Hb_000046_520--Hb_107078_010 Hb_002794_040 Hb_002794_040 Hb_000046_520--Hb_002794_040 Hb_007576_130 Hb_007576_130 Hb_000046_520--Hb_007576_130 Hb_000392_240 Hb_000392_240 Hb_000046_520--Hb_000392_240 Hb_001022_020--Hb_001396_040 Hb_001022_020--Hb_002374_200 Hb_000042_020 Hb_000042_020 Hb_001022_020--Hb_000042_020 Hb_006120_120 Hb_006120_120 Hb_001022_020--Hb_006120_120 Hb_000668_100 Hb_000668_100 Hb_001022_020--Hb_000668_100 Hb_000308_010 Hb_000308_010 Hb_015531_010--Hb_000308_010 Hb_015531_010--Hb_000046_520 Hb_015531_010--Hb_008775_030 Hb_004109_250 Hb_004109_250 Hb_015531_010--Hb_004109_250 Hb_000041_260 Hb_000041_260 Hb_015531_010--Hb_000041_260 Hb_004846_230 Hb_004846_230 Hb_001396_040--Hb_004846_230 Hb_000388_040 Hb_000388_040 Hb_001396_040--Hb_000388_040 Hb_006788_090 Hb_006788_090 Hb_001396_040--Hb_006788_090 Hb_001396_040--Hb_000134_260 Hb_001001_010 Hb_001001_010 Hb_001396_040--Hb_001001_010 Hb_000349_170 Hb_000349_170 Hb_001396_040--Hb_000349_170 Hb_004712_090 Hb_004712_090 Hb_000134_260--Hb_004712_090 Hb_004551_010 Hb_004551_010 Hb_000134_260--Hb_004551_010 Hb_003688_220 Hb_003688_220 Hb_000134_260--Hb_003688_220 Hb_000134_260--Hb_002374_200 Hb_011918_030 Hb_011918_030 Hb_000134_260--Hb_011918_030 Hb_000035_140 Hb_000035_140 Hb_000134_260--Hb_000035_140 Hb_002400_020 Hb_002400_020 Hb_002374_200--Hb_002400_020 Hb_002374_200--Hb_004551_010 Hb_000454_080 Hb_000454_080 Hb_002374_200--Hb_000454_080 Hb_001660_080 Hb_001660_080 Hb_002374_200--Hb_001660_080 Hb_000322_160 Hb_000322_160 Hb_002374_200--Hb_000322_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.010217 0.099293 0.296456 0.0490849 0.00772026 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0294692 0 0.00585351 0.0625619

CAGE analysis