Hb_003038_180

Information

Type -
Description -
Location Contig3038: 106180-110459
Sequence    

Annotation

kegg
ID rcu:RCOM_0535460
description hypothetical protein
nr
ID XP_012091073.1
description PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JD41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03376 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32048: 106267-110604 , PASA_asmbl_32049: 106573-106787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_180 0.0 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
2 Hb_000062_580 0.0714327773 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001999_120 0.0770100924 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
4 Hb_001722_040 0.0943500762 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
5 Hb_029584_140 0.0994007732 - - senescence-associated family protein [Populus trichocarpa]
6 Hb_003540_230 0.1011544325 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
7 Hb_012522_030 0.1026431178 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_001711_030 0.1042166178 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
9 Hb_000580_170 0.1078599218 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
10 Hb_000526_020 0.1102936311 - - thioredoxin-like family protein [Hevea brasiliensis]
11 Hb_002447_030 0.1118047893 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
12 Hb_000005_030 0.1136797969 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
13 Hb_000419_040 0.1144570272 - - chorismate synthase [Hevea brasiliensis]
14 Hb_001035_040 0.1155726932 - - unnamed protein product [Coffea canephora]
15 Hb_003581_090 0.1167093004 - - PREDICTED: galactose oxidase [Jatropha curcas]
16 Hb_002387_060 0.1171560889 - - conserved hypothetical protein [Ricinus communis]
17 Hb_183963_020 0.1179693947 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
18 Hb_007120_070 0.1196255917 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
19 Hb_004738_010 0.1198822031 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
20 Hb_007021_020 0.1201794072 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003038_180 Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_003038_180--Hb_000062_580 Hb_001999_120 Hb_001999_120 Hb_003038_180--Hb_001999_120 Hb_001722_040 Hb_001722_040 Hb_003038_180--Hb_001722_040 Hb_029584_140 Hb_029584_140 Hb_003038_180--Hb_029584_140 Hb_003540_230 Hb_003540_230 Hb_003038_180--Hb_003540_230 Hb_012522_030 Hb_012522_030 Hb_003038_180--Hb_012522_030 Hb_000526_020 Hb_000526_020 Hb_000062_580--Hb_000526_020 Hb_000062_580--Hb_001999_120 Hb_007021_020 Hb_007021_020 Hb_000062_580--Hb_007021_020 Hb_003581_090 Hb_003581_090 Hb_000062_580--Hb_003581_090 Hb_000062_580--Hb_001722_040 Hb_001999_120--Hb_001722_040 Hb_025087_010 Hb_025087_010 Hb_001999_120--Hb_025087_010 Hb_005618_040 Hb_005618_040 Hb_001999_120--Hb_005618_040 Hb_000926_290 Hb_000926_290 Hb_001999_120--Hb_000926_290 Hb_183963_020 Hb_183963_020 Hb_001722_040--Hb_183963_020 Hb_001722_040--Hb_025087_010 Hb_001366_230 Hb_001366_230 Hb_001722_040--Hb_001366_230 Hb_002447_030 Hb_002447_030 Hb_001722_040--Hb_002447_030 Hb_029584_140--Hb_003540_230 Hb_012799_060 Hb_012799_060 Hb_029584_140--Hb_012799_060 Hb_000580_170 Hb_000580_170 Hb_029584_140--Hb_000580_170 Hb_007120_070 Hb_007120_070 Hb_029584_140--Hb_007120_070 Hb_030765_020 Hb_030765_020 Hb_029584_140--Hb_030765_020 Hb_002235_230 Hb_002235_230 Hb_003540_230--Hb_002235_230 Hb_003540_230--Hb_000580_170 Hb_005016_130 Hb_005016_130 Hb_003540_230--Hb_005016_130 Hb_003540_230--Hb_012799_060 Hb_002387_060 Hb_002387_060 Hb_012522_030--Hb_002387_060 Hb_002326_030 Hb_002326_030 Hb_012522_030--Hb_002326_030 Hb_002291_030 Hb_002291_030 Hb_012522_030--Hb_002291_030 Hb_001711_030 Hb_001711_030 Hb_012522_030--Hb_001711_030 Hb_000419_040 Hb_000419_040 Hb_012522_030--Hb_000419_040 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
272.504 27.8259 15.7322 36.9457 125.003 167.082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
567.255 316.642 269.599 40.0807 24.7209

CAGE analysis