Hb_003038_190

Information

Type transcription factor
Description TF Family: C2H2
Location Contig3038: 111824-112993
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11420g
description POPTRDRAFT_757381; hypothetical protein
nr
ID XP_012087105.1
description PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20758 PE=4 SV=1
Gene Ontology
ID GO:0005739
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_190 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]
2 Hb_000699_090 0.1049628565 - - cyclophilin, putative [Ricinus communis]
3 Hb_000203_020 0.1059295857 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
4 Hb_002235_080 0.1121141508 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
5 Hb_000175_320 0.1130970515 - - PREDICTED: formin-like protein 14 [Jatropha curcas]
6 Hb_000331_700 0.1201639096 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
7 Hb_000093_110 0.1238005961 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
8 Hb_002006_130 0.125291066 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
9 Hb_000878_020 0.1278344204 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
10 Hb_000577_090 0.1290172207 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
11 Hb_000915_120 0.1311004252 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
12 Hb_003638_070 0.1345603966 - - hypothetical protein EUGRSUZ_E00638 [Eucalyptus grandis]
13 Hb_001225_010 0.1362891609 - - unnamed protein product [Coffea canephora]
14 Hb_000567_410 0.1376686551 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
15 Hb_012251_010 0.1385775119 - - -
16 Hb_000042_260 0.1389650511 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
17 Hb_001565_080 0.1416219458 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
18 Hb_006478_160 0.1417458934 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
19 Hb_000110_170 0.1425049701 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_011236_010 0.1432816831 - - hypothetical protein JCGZ_17006 [Jatropha curcas]

Gene co-expression network

sample Hb_003038_190 Hb_003038_190 Hb_000699_090 Hb_000699_090 Hb_003038_190--Hb_000699_090 Hb_000203_020 Hb_000203_020 Hb_003038_190--Hb_000203_020 Hb_002235_080 Hb_002235_080 Hb_003038_190--Hb_002235_080 Hb_000175_320 Hb_000175_320 Hb_003038_190--Hb_000175_320 Hb_000331_700 Hb_000331_700 Hb_003038_190--Hb_000331_700 Hb_000093_110 Hb_000093_110 Hb_003038_190--Hb_000093_110 Hb_011236_010 Hb_011236_010 Hb_000699_090--Hb_011236_010 Hb_000906_040 Hb_000906_040 Hb_000699_090--Hb_000906_040 Hb_000577_090 Hb_000577_090 Hb_000699_090--Hb_000577_090 Hb_000265_050 Hb_000265_050 Hb_000699_090--Hb_000265_050 Hb_004223_040 Hb_004223_040 Hb_000699_090--Hb_004223_040 Hb_000574_160 Hb_000574_160 Hb_000699_090--Hb_000574_160 Hb_000915_120 Hb_000915_120 Hb_000203_020--Hb_000915_120 Hb_012251_010 Hb_012251_010 Hb_000203_020--Hb_012251_010 Hb_007120_090 Hb_007120_090 Hb_000203_020--Hb_007120_090 Hb_000042_260 Hb_000042_260 Hb_000203_020--Hb_000042_260 Hb_000045_250 Hb_000045_250 Hb_000203_020--Hb_000045_250 Hb_002006_130 Hb_002006_130 Hb_000203_020--Hb_002006_130 Hb_003929_150 Hb_003929_150 Hb_002235_080--Hb_003929_150 Hb_007245_080 Hb_007245_080 Hb_002235_080--Hb_007245_080 Hb_006478_160 Hb_006478_160 Hb_002235_080--Hb_006478_160 Hb_002235_080--Hb_000093_110 Hb_000788_010 Hb_000788_010 Hb_002235_080--Hb_000788_010 Hb_008921_020 Hb_008921_020 Hb_002235_080--Hb_008921_020 Hb_003638_070 Hb_003638_070 Hb_000175_320--Hb_003638_070 Hb_000175_320--Hb_000203_020 Hb_000175_320--Hb_002006_130 Hb_023711_010 Hb_023711_010 Hb_000175_320--Hb_023711_010 Hb_000175_320--Hb_000265_050 Hb_003044_090 Hb_003044_090 Hb_000331_700--Hb_003044_090 Hb_002811_080 Hb_002811_080 Hb_000331_700--Hb_002811_080 Hb_002588_010 Hb_002588_010 Hb_000331_700--Hb_002588_010 Hb_000567_410 Hb_000567_410 Hb_000331_700--Hb_000567_410 Hb_011311_010 Hb_011311_010 Hb_000331_700--Hb_011311_010 Hb_007497_030 Hb_007497_030 Hb_000331_700--Hb_007497_030 Hb_000735_040 Hb_000735_040 Hb_000093_110--Hb_000735_040 Hb_000093_110--Hb_002588_010 Hb_000093_110--Hb_006478_160 Hb_000645_140 Hb_000645_140 Hb_000093_110--Hb_000645_140 Hb_000093_110--Hb_000567_410 Hb_174865_010 Hb_174865_010 Hb_000093_110--Hb_174865_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.92855 4.67568 1.6886 5.63545 2.36548 3.17791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.48975 30.5282 7.33394 3.70482 5.09878

CAGE analysis