Hb_003038_200

Information

Type desease resistance
Description Gene Name: MMR_HSR1
Location Contig3038: 113915-123026
Sequence    

Annotation

kegg
ID rcu:RCOM_0535350
description GTP-binding protein era, putative
nr
ID XP_012092761.1
description PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
swissprot
ID Q39T84
description GTPase Era OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=era PE=3 SV=1
trembl
ID A0A067L852
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22179 PE=3 SV=1
Gene Ontology
ID GO:0009507
description gtpase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32050: 111631-113333 , PASA_asmbl_32051: 114230-122166 , PASA_asmbl_32052: 122448-123011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_200 0.0 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
2 Hb_071188_010 0.0557162199 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
3 Hb_004310_140 0.0760818643 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000679_020 0.0807990606 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
5 Hb_000221_140 0.082131872 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_000174_170 0.0834011503 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
7 Hb_001662_140 0.0834974123 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
8 Hb_001660_120 0.0860461911 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
9 Hb_000190_030 0.0880818054 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
10 Hb_031284_010 0.0912918879 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
11 Hb_000864_030 0.092249877 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
12 Hb_000212_440 0.0934533319 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000834_200 0.09561303 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
14 Hb_001936_090 0.0958496567 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
15 Hb_000300_180 0.0967693487 - - transcription initiation factor brf1, putative [Ricinus communis]
16 Hb_007765_100 0.0988829898 - - PREDICTED: helicase SKI2W [Jatropha curcas]
17 Hb_008059_010 0.1018483275 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
18 Hb_001824_080 0.1020785738 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
19 Hb_036790_080 0.1021920994 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
20 Hb_011512_110 0.1025776068 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003038_200 Hb_003038_200 Hb_071188_010 Hb_071188_010 Hb_003038_200--Hb_071188_010 Hb_004310_140 Hb_004310_140 Hb_003038_200--Hb_004310_140 Hb_000679_020 Hb_000679_020 Hb_003038_200--Hb_000679_020 Hb_000221_140 Hb_000221_140 Hb_003038_200--Hb_000221_140 Hb_000174_170 Hb_000174_170 Hb_003038_200--Hb_000174_170 Hb_001662_140 Hb_001662_140 Hb_003038_200--Hb_001662_140 Hb_071188_010--Hb_000174_170 Hb_000864_030 Hb_000864_030 Hb_071188_010--Hb_000864_030 Hb_000190_030 Hb_000190_030 Hb_071188_010--Hb_000190_030 Hb_002311_450 Hb_002311_450 Hb_071188_010--Hb_002311_450 Hb_000025_690 Hb_000025_690 Hb_071188_010--Hb_000025_690 Hb_000797_040 Hb_000797_040 Hb_004310_140--Hb_000797_040 Hb_002205_030 Hb_002205_030 Hb_004310_140--Hb_002205_030 Hb_002592_060 Hb_002592_060 Hb_004310_140--Hb_002592_060 Hb_004310_140--Hb_000174_170 Hb_003440_060 Hb_003440_060 Hb_004310_140--Hb_003440_060 Hb_000679_020--Hb_000864_030 Hb_000661_030 Hb_000661_030 Hb_000679_020--Hb_000661_030 Hb_000679_020--Hb_000174_170 Hb_000563_420 Hb_000563_420 Hb_000679_020--Hb_000563_420 Hb_004920_090 Hb_004920_090 Hb_000679_020--Hb_004920_090 Hb_000906_100 Hb_000906_100 Hb_000679_020--Hb_000906_100 Hb_006538_120 Hb_006538_120 Hb_000221_140--Hb_006538_120 Hb_001660_120 Hb_001660_120 Hb_000221_140--Hb_001660_120 Hb_009775_010 Hb_009775_010 Hb_000221_140--Hb_009775_010 Hb_000212_440 Hb_000212_440 Hb_000221_140--Hb_000212_440 Hb_005405_020 Hb_005405_020 Hb_000221_140--Hb_005405_020 Hb_000174_170--Hb_000864_030 Hb_000165_040 Hb_000165_040 Hb_000174_170--Hb_000165_040 Hb_006483_110 Hb_006483_110 Hb_000174_170--Hb_006483_110 Hb_000563_130 Hb_000563_130 Hb_000174_170--Hb_000563_130 Hb_008059_010 Hb_008059_010 Hb_000174_170--Hb_008059_010 Hb_000331_130 Hb_000331_130 Hb_001662_140--Hb_000331_130 Hb_001662_140--Hb_001660_120 Hb_031284_010 Hb_031284_010 Hb_001662_140--Hb_031284_010 Hb_002233_130 Hb_002233_130 Hb_001662_140--Hb_002233_130 Hb_001662_140--Hb_008059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.07163 6.48527 13.1143 4.5699 10.6198 8.34092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.36998 7.21358 5.93549 8.65238 18.3024

CAGE analysis