Hb_003040_020

Information

Type -
Description -
Location Contig3040: 26802-31648
Sequence    

Annotation

kegg
ID rcu:RCOM_0801570
description ATP-dependent peptidase, putative
nr
ID XP_012077389.1
description PREDICTED: protein cereblon [Jatropha curcas]
swissprot
ID Q5R6Y2
description Protein cereblon OS=Pongo abelii GN=CRBN PE=2 SV=1
trembl
ID A0A067KD72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07742 PE=4 SV=1
Gene Ontology
ID GO:0004176
description protein cereblon

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32078: 27175-31620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003040_020 0.0 - - PREDICTED: protein cereblon [Jatropha curcas]
2 Hb_004429_160 0.0497322019 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
3 Hb_000032_010 0.051794267 - - crooked neck protein, putative [Ricinus communis]
4 Hb_005539_190 0.0609525652 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
5 Hb_000191_130 0.0638696995 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
6 Hb_019153_020 0.0662426303 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
7 Hb_000856_140 0.066585521 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
8 Hb_004659_080 0.0713828032 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
9 Hb_000753_100 0.0713858984 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
10 Hb_000116_060 0.0714805367 - - plant ubiquilin, putative [Ricinus communis]
11 Hb_001307_080 0.0735432576 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
12 Hb_000062_470 0.076829704 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
13 Hb_067193_010 0.0785361632 - - -
14 Hb_004635_050 0.0800207966 - - nucleolar phosphoprotein, putative [Ricinus communis]
15 Hb_118840_050 0.0803039969 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
16 Hb_000664_070 0.0818052418 - - PREDICTED: protein cereblon [Jatropha curcas]
17 Hb_140049_020 0.0823464205 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
18 Hb_002392_030 0.0829485711 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
19 Hb_000577_030 0.0831591787 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
20 Hb_002374_320 0.0834490898 - - hypothetical protein JCGZ_12107 [Jatropha curcas]

Gene co-expression network

sample Hb_003040_020 Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_003040_020--Hb_004429_160 Hb_000032_010 Hb_000032_010 Hb_003040_020--Hb_000032_010 Hb_005539_190 Hb_005539_190 Hb_003040_020--Hb_005539_190 Hb_000191_130 Hb_000191_130 Hb_003040_020--Hb_000191_130 Hb_019153_020 Hb_019153_020 Hb_003040_020--Hb_019153_020 Hb_000856_140 Hb_000856_140 Hb_003040_020--Hb_000856_140 Hb_004429_160--Hb_000191_130 Hb_004429_160--Hb_000032_010 Hb_001307_080 Hb_001307_080 Hb_004429_160--Hb_001307_080 Hb_000062_470 Hb_000062_470 Hb_004429_160--Hb_000062_470 Hb_000935_090 Hb_000935_090 Hb_004429_160--Hb_000935_090 Hb_000032_010--Hb_019153_020 Hb_000753_100 Hb_000753_100 Hb_000032_010--Hb_000753_100 Hb_000032_010--Hb_000191_130 Hb_000032_010--Hb_000856_140 Hb_140049_020 Hb_140049_020 Hb_005539_190--Hb_140049_020 Hb_003540_160 Hb_003540_160 Hb_005539_190--Hb_003540_160 Hb_005539_190--Hb_000032_010 Hb_005539_190--Hb_019153_020 Hb_140049_030 Hb_140049_030 Hb_005539_190--Hb_140049_030 Hb_000191_130--Hb_000062_470 Hb_000917_160 Hb_000917_160 Hb_000191_130--Hb_000917_160 Hb_000010_360 Hb_000010_360 Hb_000191_130--Hb_000010_360 Hb_000640_310 Hb_000640_310 Hb_000191_130--Hb_000640_310 Hb_019153_020--Hb_140049_020 Hb_000417_160 Hb_000417_160 Hb_019153_020--Hb_000417_160 Hb_002221_050 Hb_002221_050 Hb_019153_020--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_019153_020--Hb_000529_260 Hb_010315_090 Hb_010315_090 Hb_019153_020--Hb_010315_090 Hb_000856_140--Hb_019153_020 Hb_000856_140--Hb_004429_160 Hb_148909_030 Hb_148909_030 Hb_000856_140--Hb_148909_030 Hb_004627_060 Hb_004627_060 Hb_000856_140--Hb_004627_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.0685 34.3329 19.9455 14.6548 42.7565 28.421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3518 8.16226 12.998 20.1247 12.7317

CAGE analysis