Hb_003040_030

Information

Type -
Description -
Location Contig3040: 32508-37405
Sequence    

Annotation

kegg
ID rcu:RCOM_0801560
description malic enzyme, putative (EC:1.1.1.40)
nr
ID XP_012077390.1
description PREDICTED: NADP-dependent malic enzyme isoform X1 [Jatropha curcas]
swissprot
ID P51615
description NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1
trembl
ID B9RS07
description Malic enzyme OS=Ricinus communis GN=RCOM_0801560 PE=3 SV=1
Gene Ontology
ID GO:0005829
description nadp-dependent malic enzyme isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003040_030 0.0 - - PREDICTED: NADP-dependent malic enzyme isoform X1 [Jatropha curcas]
2 Hb_084886_010 0.1385753552 - - conserved hypothetical protein [Ricinus communis]
3 Hb_046823_010 0.1684501712 - - hypothetical protein CICLE_v100021301mg, partial [Citrus clementina]
4 Hb_000252_110 0.1757583473 - - -
5 Hb_004032_120 0.1817470359 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
6 Hb_003207_010 0.1870012957 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
7 Hb_005098_030 0.1918703772 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
8 Hb_000009_660 0.2021861167 - - -
9 Hb_000286_060 0.2052736969 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
10 Hb_003531_070 0.2094893692 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
11 Hb_000614_170 0.2105576292 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
12 Hb_001332_040 0.2114740128 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
13 Hb_006153_040 0.2129126373 - - hypothetical protein PRUPE_ppa014788mg [Prunus persica]
14 Hb_028487_170 0.2139355045 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
15 Hb_000934_190 0.2158211554 - - SER/ARG-rich protein 34A [Theobroma cacao]
16 Hb_001171_050 0.217478998 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
17 Hb_001059_150 0.219618711 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
18 Hb_004453_080 0.2197498318 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
19 Hb_005285_030 0.2203703533 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
20 Hb_001699_200 0.2208873726 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003040_030 Hb_003040_030 Hb_084886_010 Hb_084886_010 Hb_003040_030--Hb_084886_010 Hb_046823_010 Hb_046823_010 Hb_003040_030--Hb_046823_010 Hb_000252_110 Hb_000252_110 Hb_003040_030--Hb_000252_110 Hb_004032_120 Hb_004032_120 Hb_003040_030--Hb_004032_120 Hb_003207_010 Hb_003207_010 Hb_003040_030--Hb_003207_010 Hb_005098_030 Hb_005098_030 Hb_003040_030--Hb_005098_030 Hb_002411_050 Hb_002411_050 Hb_084886_010--Hb_002411_050 Hb_084886_010--Hb_005098_030 Hb_000258_330 Hb_000258_330 Hb_084886_010--Hb_000258_330 Hb_004679_050 Hb_004679_050 Hb_084886_010--Hb_004679_050 Hb_002600_040 Hb_002600_040 Hb_084886_010--Hb_002600_040 Hb_007416_110 Hb_007416_110 Hb_046823_010--Hb_007416_110 Hb_000049_110 Hb_000049_110 Hb_046823_010--Hb_000049_110 Hb_000525_050 Hb_000525_050 Hb_046823_010--Hb_000525_050 Hb_003531_070 Hb_003531_070 Hb_046823_010--Hb_003531_070 Hb_000139_340 Hb_000139_340 Hb_046823_010--Hb_000139_340 Hb_004453_080 Hb_004453_080 Hb_000252_110--Hb_004453_080 Hb_005656_100 Hb_005656_100 Hb_000252_110--Hb_005656_100 Hb_000041_240 Hb_000041_240 Hb_000252_110--Hb_000041_240 Hb_004931_100 Hb_004931_100 Hb_000252_110--Hb_004931_100 Hb_001171_050 Hb_001171_050 Hb_000252_110--Hb_001171_050 Hb_001433_110 Hb_001433_110 Hb_000252_110--Hb_001433_110 Hb_004032_120--Hb_000252_110 Hb_004032_120--Hb_001433_110 Hb_004032_120--Hb_004453_080 Hb_007432_020 Hb_007432_020 Hb_004032_120--Hb_007432_020 Hb_000154_040 Hb_000154_040 Hb_004032_120--Hb_000154_040 Hb_094970_010 Hb_094970_010 Hb_003207_010--Hb_094970_010 Hb_001731_030 Hb_001731_030 Hb_003207_010--Hb_001731_030 Hb_005015_110 Hb_005015_110 Hb_003207_010--Hb_005015_110 Hb_000808_170 Hb_000808_170 Hb_003207_010--Hb_000808_170 Hb_001493_150 Hb_001493_150 Hb_003207_010--Hb_001493_150 Hb_003207_010--Hb_000139_340 Hb_000934_190 Hb_000934_190 Hb_005098_030--Hb_000934_190 Hb_005098_030--Hb_004679_050 Hb_011671_450 Hb_011671_450 Hb_005098_030--Hb_011671_450 Hb_002119_130 Hb_002119_130 Hb_005098_030--Hb_002119_130 Hb_017131_010 Hb_017131_010 Hb_005098_030--Hb_017131_010 Hb_003622_040 Hb_003622_040 Hb_005098_030--Hb_003622_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02685 0.987093 3.7465 2.55064 0.327238 0.262695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.43284 2.5863 5.44503 8.3667 4.14597

CAGE analysis