Hb_003040_050

Information

Type -
Description -
Location Contig3040: 93201-102993
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08230g
description POPTRDRAFT_736966; hypothetical protein
nr
ID XP_012077385.1
description PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
swissprot
ID P40235
description Casein kinase I homolog hhp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hhp1 PE=2 SV=1
trembl
ID A0A067KGP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07739 PE=3 SV=1
Gene Ontology
ID GO:0004674
description casein kinase i protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32084: 96869-103293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003040_050 0.0 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
2 Hb_009288_020 0.0377808639 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
3 Hb_073171_070 0.042135891 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
4 Hb_006663_060 0.0495268988 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
5 Hb_000317_100 0.0499223671 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
6 Hb_011174_020 0.0563025109 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
7 Hb_001925_060 0.0565103231 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
8 Hb_006839_010 0.0594876324 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
9 Hb_000773_040 0.0597121993 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
10 Hb_005215_010 0.0598627889 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
11 Hb_000441_090 0.0623807606 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
12 Hb_002890_130 0.0635335498 - - tip120, putative [Ricinus communis]
13 Hb_003498_080 0.0643023601 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
14 Hb_001377_190 0.0650432705 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
15 Hb_007413_010 0.0655956201 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
16 Hb_000538_280 0.0657767038 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
17 Hb_000059_230 0.066729244 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
18 Hb_000270_190 0.0669957251 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
19 Hb_002874_110 0.0681649339 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
20 Hb_033312_130 0.0681856161 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003040_050 Hb_003040_050 Hb_009288_020 Hb_009288_020 Hb_003040_050--Hb_009288_020 Hb_073171_070 Hb_073171_070 Hb_003040_050--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_003040_050--Hb_006663_060 Hb_000317_100 Hb_000317_100 Hb_003040_050--Hb_000317_100 Hb_011174_020 Hb_011174_020 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060 Hb_009288_020--Hb_006663_060 Hb_009288_020--Hb_073171_070 Hb_006839_010 Hb_006839_010 Hb_009288_020--Hb_006839_010 Hb_000059_230 Hb_000059_230 Hb_009288_020--Hb_000059_230 Hb_009288_020--Hb_011174_020 Hb_000773_040 Hb_000773_040 Hb_073171_070--Hb_000773_040 Hb_073171_070--Hb_006663_060 Hb_000270_190 Hb_000270_190 Hb_073171_070--Hb_000270_190 Hb_007413_010 Hb_007413_010 Hb_073171_070--Hb_007413_010 Hb_006210_010 Hb_006210_010 Hb_006663_060--Hb_006210_010 Hb_002874_110 Hb_002874_110 Hb_006663_060--Hb_002874_110 Hb_000568_050 Hb_000568_050 Hb_006663_060--Hb_000568_050 Hb_005215_010 Hb_005215_010 Hb_000317_100--Hb_005215_010 Hb_002890_130 Hb_002890_130 Hb_000317_100--Hb_002890_130 Hb_011819_020 Hb_011819_020 Hb_000317_100--Hb_011819_020 Hb_002411_110 Hb_002411_110 Hb_000317_100--Hb_002411_110 Hb_000317_100--Hb_000773_040 Hb_012244_020 Hb_012244_020 Hb_011174_020--Hb_012244_020 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_011174_020--Hb_001925_060 Hb_017469_110 Hb_017469_110 Hb_011174_020--Hb_017469_110 Hb_001925_060--Hb_002411_110 Hb_001925_060--Hb_007413_010 Hb_001925_060--Hb_000317_100 Hb_000795_040 Hb_000795_040 Hb_001925_060--Hb_000795_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.64936 16.368 12.1169 15.545 9.81162 11.202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.25798 8.04727 9.22755 13.3666 21.6656

CAGE analysis