Hb_003041_060

Information

Type -
Description -
Location Contig3041: 114084-119341
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32086: 118322-119267
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003041_060 0.0 - - -
2 Hb_019715_020 0.1731803304 - - -
3 Hb_003912_090 0.1931550781 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
4 Hb_001021_230 0.2031374196 - - -
5 Hb_000840_270 0.2031613151 - - PREDICTED: small RNA degrading nuclease 1 [Jatropha curcas]
6 Hb_029921_040 0.2071563938 - - conserved hypothetical protein [Ricinus communis]
7 Hb_023732_090 0.2090648386 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_000268_020 0.2096203001 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000157_100 0.2099900696 - - hypothetical protein B456_007G083500 [Gossypium raimondii]
10 Hb_000051_170 0.2112821726 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_150360_010 0.2115566696 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
12 Hb_005016_050 0.2164964224 - - -
13 Hb_111722_010 0.2180857751 - - PREDICTED: uncharacterized protein LOC105634044 isoform X2 [Jatropha curcas]
14 Hb_000927_020 0.2194015025 - - synaptosomal associated protein, putative [Ricinus communis]
15 Hb_156825_010 0.2195702225 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
16 Hb_000342_080 0.2223664714 - - hypothetical protein L484_019524 [Morus notabilis]
17 Hb_007380_080 0.2237548189 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
18 Hb_184570_010 0.2239592972 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
19 Hb_012052_010 0.2243678449 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
20 Hb_000946_170 0.2262416569 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_003041_060 Hb_003041_060 Hb_019715_020 Hb_019715_020 Hb_003041_060--Hb_019715_020 Hb_003912_090 Hb_003912_090 Hb_003041_060--Hb_003912_090 Hb_001021_230 Hb_001021_230 Hb_003041_060--Hb_001021_230 Hb_000840_270 Hb_000840_270 Hb_003041_060--Hb_000840_270 Hb_029921_040 Hb_029921_040 Hb_003041_060--Hb_029921_040 Hb_023732_090 Hb_023732_090 Hb_003041_060--Hb_023732_090 Hb_019715_020--Hb_001021_230 Hb_000268_020 Hb_000268_020 Hb_019715_020--Hb_000268_020 Hb_015807_010 Hb_015807_010 Hb_019715_020--Hb_015807_010 Hb_025299_010 Hb_025299_010 Hb_019715_020--Hb_025299_010 Hb_000529_100 Hb_000529_100 Hb_019715_020--Hb_000529_100 Hb_005862_010 Hb_005862_010 Hb_003912_090--Hb_005862_010 Hb_028420_020 Hb_028420_020 Hb_003912_090--Hb_028420_020 Hb_144598_030 Hb_144598_030 Hb_003912_090--Hb_144598_030 Hb_005016_050 Hb_005016_050 Hb_003912_090--Hb_005016_050 Hb_020665_040 Hb_020665_040 Hb_003912_090--Hb_020665_040 Hb_002374_020 Hb_002374_020 Hb_003912_090--Hb_002374_020 Hb_008578_010 Hb_008578_010 Hb_001021_230--Hb_008578_010 Hb_000621_060 Hb_000621_060 Hb_001021_230--Hb_000621_060 Hb_000065_080 Hb_000065_080 Hb_001021_230--Hb_000065_080 Hb_003544_090 Hb_003544_090 Hb_001021_230--Hb_003544_090 Hb_007632_250 Hb_007632_250 Hb_001021_230--Hb_007632_250 Hb_000270_360 Hb_000270_360 Hb_001021_230--Hb_000270_360 Hb_003106_130 Hb_003106_130 Hb_000840_270--Hb_003106_130 Hb_000157_030 Hb_000157_030 Hb_000840_270--Hb_000157_030 Hb_000025_760 Hb_000025_760 Hb_000840_270--Hb_000025_760 Hb_002235_150 Hb_002235_150 Hb_000840_270--Hb_002235_150 Hb_002408_010 Hb_002408_010 Hb_000840_270--Hb_002408_010 Hb_000840_270--Hb_008578_010 Hb_000189_340 Hb_000189_340 Hb_029921_040--Hb_000189_340 Hb_002687_130 Hb_002687_130 Hb_029921_040--Hb_002687_130 Hb_002495_040 Hb_002495_040 Hb_029921_040--Hb_002495_040 Hb_000373_240 Hb_000373_240 Hb_029921_040--Hb_000373_240 Hb_114343_010 Hb_114343_010 Hb_029921_040--Hb_114343_010 Hb_000272_020 Hb_000272_020 Hb_029921_040--Hb_000272_020 Hb_023732_090--Hb_005016_050 Hb_000748_080 Hb_000748_080 Hb_023732_090--Hb_000748_080 Hb_005389_150 Hb_005389_150 Hb_023732_090--Hb_005389_150 Hb_010423_040 Hb_010423_040 Hb_023732_090--Hb_010423_040 Hb_012799_130 Hb_012799_130 Hb_023732_090--Hb_012799_130 Hb_012490_030 Hb_012490_030 Hb_023732_090--Hb_012490_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.124093 0.0698246 0.19922 0.108649 0.401363 0.712745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.598436 0.282362 0 0.227905 0.190561

CAGE analysis