Hb_003043_060

Information

Type -
Description -
Location Contig3043: 83815-85652
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003043_060 0.0 - - -
2 Hb_000001_160 0.1522899269 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
3 Hb_001901_080 0.1618156831 - - PREDICTED: xylose isomerase [Jatropha curcas]
4 Hb_120662_010 0.1659856231 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
5 Hb_000613_100 0.1740619491 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
6 Hb_027420_050 0.1761487024 - - -
7 Hb_003243_020 0.1777865325 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
8 Hb_000619_070 0.1801487898 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
9 Hb_010584_010 0.1835688997 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
10 Hb_010254_020 0.1835869203 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
11 Hb_006882_010 0.1866452819 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
12 Hb_006816_120 0.1900713523 - - Nicotianamine synthase, putative [Ricinus communis]
13 Hb_031069_020 0.1929819559 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
14 Hb_000027_030 0.1933940897 - - Uncharacterized protein isoform 1 [Theobroma cacao]
15 Hb_006275_050 0.1934511169 - - CP3 [Hevea brasiliensis]
16 Hb_004631_160 0.1964348682 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
17 Hb_020805_010 0.196651265 - - protein with unknown function [Ricinus communis]
18 Hb_078477_040 0.1973108938 - - nuclear movement protein nudc, putative [Ricinus communis]
19 Hb_003376_070 0.1987764227 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
20 Hb_000720_070 0.2005032456 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]

Gene co-expression network

sample Hb_003043_060 Hb_003043_060 Hb_000001_160 Hb_000001_160 Hb_003043_060--Hb_000001_160 Hb_001901_080 Hb_001901_080 Hb_003043_060--Hb_001901_080 Hb_120662_010 Hb_120662_010 Hb_003043_060--Hb_120662_010 Hb_000613_100 Hb_000613_100 Hb_003043_060--Hb_000613_100 Hb_027420_050 Hb_027420_050 Hb_003043_060--Hb_027420_050 Hb_003243_020 Hb_003243_020 Hb_003043_060--Hb_003243_020 Hb_000001_160--Hb_003243_020 Hb_030627_040 Hb_030627_040 Hb_000001_160--Hb_030627_040 Hb_012340_020 Hb_012340_020 Hb_000001_160--Hb_012340_020 Hb_002518_300 Hb_002518_300 Hb_000001_160--Hb_002518_300 Hb_002326_060 Hb_002326_060 Hb_000001_160--Hb_002326_060 Hb_031069_020 Hb_031069_020 Hb_001901_080--Hb_031069_020 Hb_078477_040 Hb_078477_040 Hb_001901_080--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_001901_080--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_001901_080--Hb_001489_070 Hb_006882_010 Hb_006882_010 Hb_001901_080--Hb_006882_010 Hb_006002_030 Hb_006002_030 Hb_001901_080--Hb_006002_030 Hb_001935_190 Hb_001935_190 Hb_120662_010--Hb_001935_190 Hb_120662_010--Hb_030627_040 Hb_050686_010 Hb_050686_010 Hb_120662_010--Hb_050686_010 Hb_000329_420 Hb_000329_420 Hb_120662_010--Hb_000329_420 Hb_120662_010--Hb_001901_080 Hb_000849_100 Hb_000849_100 Hb_000613_100--Hb_000849_100 Hb_000613_100--Hb_006002_030 Hb_003716_020 Hb_003716_020 Hb_000613_100--Hb_003716_020 Hb_001582_030 Hb_001582_030 Hb_000613_100--Hb_001582_030 Hb_002235_320 Hb_002235_320 Hb_000613_100--Hb_002235_320 Hb_000261_520 Hb_000261_520 Hb_000613_100--Hb_000261_520 Hb_003710_040 Hb_003710_040 Hb_027420_050--Hb_003710_040 Hb_000720_070 Hb_000720_070 Hb_027420_050--Hb_000720_070 Hb_000264_010 Hb_000264_010 Hb_027420_050--Hb_000264_010 Hb_000640_200 Hb_000640_200 Hb_027420_050--Hb_000640_200 Hb_010584_010 Hb_010584_010 Hb_027420_050--Hb_010584_010 Hb_057451_010 Hb_057451_010 Hb_027420_050--Hb_057451_010 Hb_003243_020--Hb_002518_300 Hb_003243_020--Hb_006882_010 Hb_008406_130 Hb_008406_130 Hb_003243_020--Hb_008406_130 Hb_002159_030 Hb_002159_030 Hb_003243_020--Hb_002159_030 Hb_003243_020--Hb_001901_080 Hb_099698_010 Hb_099698_010 Hb_003243_020--Hb_099698_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83704 2.74019 0.108289 2.42759 9.54323 6.86903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.475966 0.623107 0.619424 1.41386 0.454836

CAGE analysis