Hb_003043_070

Information

Type -
Description -
Location Contig3043: 86731-90081
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32089: 88473-89390 , PASA_asmbl_32090: 67148-90165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003043_070 0.0 - - -
2 Hb_086703_010 0.0934918564 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
3 Hb_001269_320 0.1093514479 - - 40S ribosomal protein S12A [Hevea brasiliensis]
4 Hb_000505_140 0.1122606826 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
5 Hb_004502_020 0.1132580403 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
6 Hb_002272_260 0.1177284555 - - -
7 Hb_000003_730 0.1196787431 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
8 Hb_000676_290 0.1199923511 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
9 Hb_003011_040 0.1211164043 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
10 Hb_003687_020 0.1272200332 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
11 Hb_000771_100 0.1272976516 - - Os06g0527300 [Oryza sativa Japonica Group]
12 Hb_002311_320 0.1285680858 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
13 Hb_000155_180 0.1288584697 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
14 Hb_025193_050 0.1299190684 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
15 Hb_007441_270 0.1306650638 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
16 Hb_002259_150 0.1335562483 - - BnaC04g40780D [Brassica napus]
17 Hb_184570_010 0.1339986818 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
18 Hb_014834_140 0.134207308 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
19 Hb_000193_350 0.1343899542 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
20 Hb_156635_030 0.1347701103 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_003043_070 Hb_003043_070 Hb_086703_010 Hb_086703_010 Hb_003043_070--Hb_086703_010 Hb_001269_320 Hb_001269_320 Hb_003043_070--Hb_001269_320 Hb_000505_140 Hb_000505_140 Hb_003043_070--Hb_000505_140 Hb_004502_020 Hb_004502_020 Hb_003043_070--Hb_004502_020 Hb_002272_260 Hb_002272_260 Hb_003043_070--Hb_002272_260 Hb_000003_730 Hb_000003_730 Hb_003043_070--Hb_000003_730 Hb_000771_100 Hb_000771_100 Hb_086703_010--Hb_000771_100 Hb_000155_180 Hb_000155_180 Hb_086703_010--Hb_000155_180 Hb_086703_010--Hb_001269_320 Hb_003011_040 Hb_003011_040 Hb_086703_010--Hb_003011_040 Hb_003405_060 Hb_003405_060 Hb_086703_010--Hb_003405_060 Hb_003266_050 Hb_003266_050 Hb_001269_320--Hb_003266_050 Hb_007229_070 Hb_007229_070 Hb_001269_320--Hb_007229_070 Hb_004440_050 Hb_004440_050 Hb_001269_320--Hb_004440_050 Hb_001369_660 Hb_001369_660 Hb_001269_320--Hb_001369_660 Hb_001269_320--Hb_003011_040 Hb_001279_070 Hb_001279_070 Hb_001269_320--Hb_001279_070 Hb_012022_120 Hb_012022_120 Hb_000505_140--Hb_012022_120 Hb_000000_170 Hb_000000_170 Hb_000505_140--Hb_000000_170 Hb_032202_090 Hb_032202_090 Hb_000505_140--Hb_032202_090 Hb_000505_140--Hb_004502_020 Hb_000086_550 Hb_000086_550 Hb_000505_140--Hb_000086_550 Hb_000926_300 Hb_000926_300 Hb_000505_140--Hb_000926_300 Hb_031089_040 Hb_031089_040 Hb_004502_020--Hb_031089_040 Hb_004502_020--Hb_000155_180 Hb_004502_020--Hb_000003_730 Hb_002207_110 Hb_002207_110 Hb_004502_020--Hb_002207_110 Hb_004502_020--Hb_032202_090 Hb_002272_260--Hb_000771_100 Hb_004453_150 Hb_004453_150 Hb_002272_260--Hb_004453_150 Hb_000676_290 Hb_000676_290 Hb_002272_260--Hb_000676_290 Hb_002301_280 Hb_002301_280 Hb_002272_260--Hb_002301_280 Hb_002259_150 Hb_002259_150 Hb_002272_260--Hb_002259_150 Hb_011174_010 Hb_011174_010 Hb_002272_260--Hb_011174_010 Hb_007441_270 Hb_007441_270 Hb_000003_730--Hb_007441_270 Hb_004032_100 Hb_004032_100 Hb_000003_730--Hb_004032_100 Hb_000003_730--Hb_031089_040 Hb_000684_230 Hb_000684_230 Hb_000003_730--Hb_000684_230 Hb_002296_040 Hb_002296_040 Hb_000003_730--Hb_002296_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58454 0.890341 1.48573 2.66081 4.07739 8.10558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.33402 7.65524 1.85124 2.00173 0.924682

CAGE analysis