Hb_003044_020

Information

Type -
Description -
Location Contig3044: 17521-21769
Sequence    

Annotation

kegg
ID rcu:RCOM_1120160
description hypothetical protein
nr
ID XP_012081419.1
description PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID A0A067KCD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18464 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32099: 17183-21772 , PASA_asmbl_32100: 17461-17756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003044_020 0.0 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
2 Hb_000922_370 0.0515974628 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
3 Hb_000183_020 0.0543699805 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
4 Hb_006252_020 0.0560545441 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
5 Hb_003966_030 0.0568378689 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
6 Hb_003362_070 0.0572838995 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
7 Hb_002329_040 0.0584331666 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
8 Hb_002174_020 0.0615787071 - - ring finger protein, putative [Ricinus communis]
9 Hb_000160_290 0.0616591425 - - unnamed protein product [Vitis vinifera]
10 Hb_002301_080 0.0632804737 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
11 Hb_000743_040 0.0667427879 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
12 Hb_001195_320 0.0675492932 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
13 Hb_008112_030 0.0694758168 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009411_010 0.0702662619 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
15 Hb_000101_240 0.0703558194 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
16 Hb_000613_080 0.0706711074 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
17 Hb_027380_140 0.0706767736 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
18 Hb_000283_070 0.0709450703 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
19 Hb_000768_070 0.0710426219 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
20 Hb_000785_040 0.0736385938 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]

Gene co-expression network

sample Hb_003044_020 Hb_003044_020 Hb_000922_370 Hb_000922_370 Hb_003044_020--Hb_000922_370 Hb_000183_020 Hb_000183_020 Hb_003044_020--Hb_000183_020 Hb_006252_020 Hb_006252_020 Hb_003044_020--Hb_006252_020 Hb_003966_030 Hb_003966_030 Hb_003044_020--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_003044_020--Hb_003362_070 Hb_002329_040 Hb_002329_040 Hb_003044_020--Hb_002329_040 Hb_007426_130 Hb_007426_130 Hb_000922_370--Hb_007426_130 Hb_000922_370--Hb_002329_040 Hb_000922_370--Hb_003362_070 Hb_002174_020 Hb_002174_020 Hb_000922_370--Hb_002174_020 Hb_000160_290 Hb_000160_290 Hb_000922_370--Hb_000160_290 Hb_000183_020--Hb_002329_040 Hb_001195_320 Hb_001195_320 Hb_000183_020--Hb_001195_320 Hb_000183_020--Hb_003362_070 Hb_000166_130 Hb_000166_130 Hb_000183_020--Hb_000166_130 Hb_000183_020--Hb_000922_370 Hb_006252_020--Hb_002174_020 Hb_004659_080 Hb_004659_080 Hb_006252_020--Hb_004659_080 Hb_004128_050 Hb_004128_050 Hb_006252_020--Hb_004128_050 Hb_001454_280 Hb_001454_280 Hb_006252_020--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_006252_020--Hb_008112_030 Hb_003966_030--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_003966_030--Hb_004102_140 Hb_001617_060 Hb_001617_060 Hb_003966_030--Hb_001617_060 Hb_000613_080 Hb_000613_080 Hb_003966_030--Hb_000613_080 Hb_000347_130 Hb_000347_130 Hb_003966_030--Hb_000347_130 Hb_016898_010 Hb_016898_010 Hb_003362_070--Hb_016898_010 Hb_004935_030 Hb_004935_030 Hb_003362_070--Hb_004935_030 Hb_048476_180 Hb_048476_180 Hb_003362_070--Hb_048476_180 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_000740_100 Hb_000740_100 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_002329_040--Hb_001195_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5632 15.7375 6.70751 9.93573 19.9222 23.2
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.18392 6.96097 11.0102 11.6925 10.806

CAGE analysis