Hb_003044_090

Information

Type -
Description -
Location Contig3044: 98992-101336
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12670g
description POPTRDRAFT_231983; hypothetical protein
nr
ID XP_012075689.1
description PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
swissprot
ID P43394
description Fruit protein pKIWI502 OS=Actinidia deliciosa GN=pKIWI502 PE=2 SV=1
trembl
ID A0A067KRS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09278 PE=4 SV=1
Gene Ontology
ID GO:0016491
description fruit protein pkiwi502

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32104: 93934-98295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003044_090 0.0 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
2 Hb_000331_700 0.0654083804 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
3 Hb_002811_080 0.094860264 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
4 Hb_000975_320 0.0974250227 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
5 Hb_011311_010 0.1067556513 - - 60S ribosomal protein L27C [Hevea brasiliensis]
6 Hb_005511_160 0.1118962432 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
7 Hb_001565_080 0.112043996 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
8 Hb_000906_040 0.1129997604 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
9 Hb_007497_030 0.1143762198 - - mutt domain protein, putative [Ricinus communis]
10 Hb_012368_020 0.1166518503 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
11 Hb_000349_290 0.1175452652 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
12 Hb_001863_400 0.1192611679 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
13 Hb_002588_010 0.1203095581 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
14 Hb_002217_450 0.1229197005 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
15 Hb_005496_010 0.1253179415 - - PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]
16 Hb_003641_020 0.1254656265 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
17 Hb_007044_060 0.1263744632 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000258_170 0.1263921796 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
19 Hb_002231_030 0.1265878264 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
20 Hb_116349_110 0.1269114772 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]

Gene co-expression network

sample Hb_003044_090 Hb_003044_090 Hb_000331_700 Hb_000331_700 Hb_003044_090--Hb_000331_700 Hb_002811_080 Hb_002811_080 Hb_003044_090--Hb_002811_080 Hb_000975_320 Hb_000975_320 Hb_003044_090--Hb_000975_320 Hb_011311_010 Hb_011311_010 Hb_003044_090--Hb_011311_010 Hb_005511_160 Hb_005511_160 Hb_003044_090--Hb_005511_160 Hb_001565_080 Hb_001565_080 Hb_003044_090--Hb_001565_080 Hb_000331_700--Hb_002811_080 Hb_002588_010 Hb_002588_010 Hb_000331_700--Hb_002588_010 Hb_000567_410 Hb_000567_410 Hb_000331_700--Hb_000567_410 Hb_000331_700--Hb_011311_010 Hb_007497_030 Hb_007497_030 Hb_000331_700--Hb_007497_030 Hb_002811_080--Hb_000567_410 Hb_002811_080--Hb_000975_320 Hb_002811_080--Hb_002588_010 Hb_000330_070 Hb_000330_070 Hb_002811_080--Hb_000330_070 Hb_002811_080--Hb_011311_010 Hb_012368_020 Hb_012368_020 Hb_000975_320--Hb_012368_020 Hb_000906_040 Hb_000906_040 Hb_000975_320--Hb_000906_040 Hb_000975_320--Hb_005511_160 Hb_011628_040 Hb_011628_040 Hb_000975_320--Hb_011628_040 Hb_004223_040 Hb_004223_040 Hb_000975_320--Hb_004223_040 Hb_002660_030 Hb_002660_030 Hb_011311_010--Hb_002660_030 Hb_011311_010--Hb_002588_010 Hb_026398_010 Hb_026398_010 Hb_011311_010--Hb_026398_010 Hb_007944_040 Hb_007944_040 Hb_011311_010--Hb_007944_040 Hb_004724_160 Hb_004724_160 Hb_011311_010--Hb_004724_160 Hb_002925_030 Hb_002925_030 Hb_011311_010--Hb_002925_030 Hb_005511_160--Hb_011628_040 Hb_002259_070 Hb_002259_070 Hb_005511_160--Hb_002259_070 Hb_001979_040 Hb_001979_040 Hb_005511_160--Hb_001979_040 Hb_003656_070 Hb_003656_070 Hb_005511_160--Hb_003656_070 Hb_003203_040 Hb_003203_040 Hb_005511_160--Hb_003203_040 Hb_007416_030 Hb_007416_030 Hb_005511_160--Hb_007416_030 Hb_000349_290 Hb_000349_290 Hb_001565_080--Hb_000349_290 Hb_000215_060 Hb_000215_060 Hb_001565_080--Hb_000215_060 Hb_000363_480 Hb_000363_480 Hb_001565_080--Hb_000363_480 Hb_032260_030 Hb_032260_030 Hb_001565_080--Hb_032260_030 Hb_001565_080--Hb_000331_700 Hb_000881_080 Hb_000881_080 Hb_001565_080--Hb_000881_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.03409 6.93827 4.35611 4.2516 6.65661 7.26582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1295 39.599 14.6267 4.60616 2.52075

CAGE analysis