Hb_003044_100

Information

Type -
Description -
Location Contig3044: 104068-107739
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12570g
description POPTRDRAFT_820652; hypothetical protein
nr
ID KHG21715.1
description hypothetical protein F383_08446 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0P9G4
description Uncharacterized protein OS=Gossypium arboreum GN=F383_08446 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32108: 103808-107725 , PASA_asmbl_32109: 103808-107688 , PASA_asmbl_32110: 105084-105430
cDNA
(Sanger)
(ID:Location)		 021_C13.ab1: 104559-107721

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003044_100 0.0 - - hypothetical protein F383_08446 [Gossypium arboreum]
2 Hb_031939_010 0.063974511 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
3 Hb_007026_030 0.0739144396 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
4 Hb_000012_020 0.0758867191 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
5 Hb_000290_020 0.0771843478 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
6 Hb_004198_010 0.0786774411 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
7 Hb_006064_010 0.0795624686 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
8 Hb_001766_150 0.079584232 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
9 Hb_178968_100 0.0800215283 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
10 Hb_009265_080 0.0809902968 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
11 Hb_011942_080 0.08315239 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
12 Hb_001983_030 0.0842627861 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
13 Hb_000976_320 0.0845924715 - - UPF0061 protein azo1574 [Morus notabilis]
14 Hb_001142_050 0.0846976593 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
15 Hb_000088_200 0.084869864 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
16 Hb_012092_010 0.0857007042 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
17 Hb_171900_100 0.0859545499 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
18 Hb_001369_180 0.0878450746 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
19 Hb_004044_020 0.0880106071 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
20 Hb_004195_280 0.0887440515 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_003044_100 Hb_003044_100 Hb_031939_010 Hb_031939_010 Hb_003044_100--Hb_031939_010 Hb_007026_030 Hb_007026_030 Hb_003044_100--Hb_007026_030 Hb_000012_020 Hb_000012_020 Hb_003044_100--Hb_000012_020 Hb_000290_020 Hb_000290_020 Hb_003044_100--Hb_000290_020 Hb_004198_010 Hb_004198_010 Hb_003044_100--Hb_004198_010 Hb_006064_010 Hb_006064_010 Hb_003044_100--Hb_006064_010 Hb_011942_080 Hb_011942_080 Hb_031939_010--Hb_011942_080 Hb_008887_050 Hb_008887_050 Hb_031939_010--Hb_008887_050 Hb_031939_010--Hb_000290_020 Hb_001014_010 Hb_001014_010 Hb_031939_010--Hb_001014_010 Hb_005245_130 Hb_005245_130 Hb_031939_010--Hb_005245_130 Hb_000794_050 Hb_000794_050 Hb_007026_030--Hb_000794_050 Hb_178968_100 Hb_178968_100 Hb_007026_030--Hb_178968_100 Hb_001575_100 Hb_001575_100 Hb_007026_030--Hb_001575_100 Hb_000368_020 Hb_000368_020 Hb_007026_030--Hb_000368_020 Hb_012098_110 Hb_012098_110 Hb_007026_030--Hb_012098_110 Hb_001142_050 Hb_001142_050 Hb_000012_020--Hb_001142_050 Hb_000976_260 Hb_000976_260 Hb_000012_020--Hb_000976_260 Hb_000012_020--Hb_000290_020 Hb_002639_150 Hb_002639_150 Hb_000012_020--Hb_002639_150 Hb_000156_140 Hb_000156_140 Hb_000012_020--Hb_000156_140 Hb_001047_100 Hb_001047_100 Hb_000290_020--Hb_001047_100 Hb_011848_010 Hb_011848_010 Hb_000290_020--Hb_011848_010 Hb_000290_020--Hb_008887_050 Hb_143629_010 Hb_143629_010 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220 Hb_000956_030 Hb_000956_030 Hb_004198_010--Hb_000956_030 Hb_003434_060 Hb_003434_060 Hb_004198_010--Hb_003434_060 Hb_000364_060 Hb_000364_060 Hb_004198_010--Hb_000364_060 Hb_000120_500 Hb_000120_500 Hb_004198_010--Hb_000120_500 Hb_004450_010 Hb_004450_010 Hb_004198_010--Hb_004450_010 Hb_000690_130 Hb_000690_130 Hb_006064_010--Hb_000690_130 Hb_003728_080 Hb_003728_080 Hb_006064_010--Hb_003728_080 Hb_000879_200 Hb_000879_200 Hb_006064_010--Hb_000879_200 Hb_011139_030 Hb_011139_030 Hb_006064_010--Hb_011139_030 Hb_006064_010--Hb_007026_030 Hb_009646_030 Hb_009646_030 Hb_006064_010--Hb_009646_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.6128 15.1983 29.7457 16.5072 48.5768 64.8113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9561 34.7625 23.4997 16.9979 14.6499

CAGE analysis