Hb_003047_020

Information

Type transcription factor
Description TF Family: bZIP
Location Contig3047: 42009-47675
Sequence    

Annotation

kegg
ID rcu:RCOM_0813280
description DNA binding protein, putative
nr
ID XP_002518757.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9M7Q3
description ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1
trembl
ID B9RYH3
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0813280 PE=4 SV=1
Gene Ontology
ID GO:0003700
description abscisic acid-insensitive 5-like protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32111: 41996-47561 , PASA_asmbl_32112: 44720-47561 , PASA_asmbl_32114: 44953-45212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003047_020 0.0 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
2 Hb_021596_010 0.0510105041 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
3 Hb_000003_410 0.0732148702 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
4 Hb_020805_150 0.0745677204 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_000703_200 0.0778072297 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
6 Hb_012490_010 0.0794203504 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
7 Hb_009302_030 0.0809281541 - - hypothetical protein RCOM_1176340 [Ricinus communis]
8 Hb_011161_020 0.0812315338 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
9 Hb_002928_190 0.0813555005 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
10 Hb_000958_050 0.0822772523 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
11 Hb_000645_130 0.0834698815 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
12 Hb_003216_090 0.0852376089 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
13 Hb_005408_030 0.0852420383 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
14 Hb_000009_410 0.0856582988 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
15 Hb_000479_070 0.0858524147 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
16 Hb_004659_090 0.085962733 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
17 Hb_000665_230 0.0865691206 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
18 Hb_003939_060 0.086724263 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012368_100 0.0874709283 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
20 Hb_001951_170 0.0880004615 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]

Gene co-expression network

sample Hb_003047_020 Hb_003047_020 Hb_021596_010 Hb_021596_010 Hb_003047_020--Hb_021596_010 Hb_000003_410 Hb_000003_410 Hb_003047_020--Hb_000003_410 Hb_020805_150 Hb_020805_150 Hb_003047_020--Hb_020805_150 Hb_000703_200 Hb_000703_200 Hb_003047_020--Hb_000703_200 Hb_012490_010 Hb_012490_010 Hb_003047_020--Hb_012490_010 Hb_009302_030 Hb_009302_030 Hb_003047_020--Hb_009302_030 Hb_000367_020 Hb_000367_020 Hb_021596_010--Hb_000367_020 Hb_021596_010--Hb_000003_410 Hb_000958_050 Hb_000958_050 Hb_021596_010--Hb_000958_050 Hb_005408_030 Hb_005408_030 Hb_021596_010--Hb_005408_030 Hb_008686_020 Hb_008686_020 Hb_021596_010--Hb_008686_020 Hb_000003_410--Hb_000958_050 Hb_001133_030 Hb_001133_030 Hb_000003_410--Hb_001133_030 Hb_000934_210 Hb_000934_210 Hb_000003_410--Hb_000934_210 Hb_003216_090 Hb_003216_090 Hb_000003_410--Hb_003216_090 Hb_000009_410 Hb_000009_410 Hb_000003_410--Hb_000009_410 Hb_022425_060 Hb_022425_060 Hb_020805_150--Hb_022425_060 Hb_002928_190 Hb_002928_190 Hb_020805_150--Hb_002928_190 Hb_170077_010 Hb_170077_010 Hb_020805_150--Hb_170077_010 Hb_003918_030 Hb_003918_030 Hb_020805_150--Hb_003918_030 Hb_020805_150--Hb_012490_010 Hb_005649_080 Hb_005649_080 Hb_020805_150--Hb_005649_080 Hb_000703_200--Hb_009302_030 Hb_000024_040 Hb_000024_040 Hb_000703_200--Hb_000024_040 Hb_007426_060 Hb_007426_060 Hb_000703_200--Hb_007426_060 Hb_001545_150 Hb_001545_150 Hb_000703_200--Hb_001545_150 Hb_001723_010 Hb_001723_010 Hb_000703_200--Hb_001723_010 Hb_004517_020 Hb_004517_020 Hb_000703_200--Hb_004517_020 Hb_004696_070 Hb_004696_070 Hb_012490_010--Hb_004696_070 Hb_012490_010--Hb_008686_020 Hb_012490_010--Hb_002928_190 Hb_004551_020 Hb_004551_020 Hb_012490_010--Hb_004551_020 Hb_000170_100 Hb_000170_100 Hb_012490_010--Hb_000170_100 Hb_003939_060 Hb_003939_060 Hb_009302_030--Hb_003939_060 Hb_000645_130 Hb_000645_130 Hb_009302_030--Hb_000645_130 Hb_011249_060 Hb_011249_060 Hb_009302_030--Hb_011249_060 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.4248 30.0282 13.036 11.7467 9.98695 10.4598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.06901 5.00242 13.0355 14.5077 19.0615

CAGE analysis