Hb_003050_010

Information

Type -
Description -
Location Contig3050: 7601-7951
Sequence    

Annotation

kegg
ID rcu:RCOM_0632480
description hypothetical protein
nr
ID XP_012072112.1
description PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
swissprot
ID Q1G3U8
description VQ motif-containing protein 1 OS=Arabidopsis thaliana GN=VQ1 PE=1 SV=1
trembl
ID A0A067KP20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04624 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32115: 7542-8180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_010 0.0 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
2 Hb_001285_020 0.0899098736 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_002025_290 0.1182161585 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
4 Hb_000987_160 0.1283386021 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
5 Hb_000334_160 0.1346035875 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009102_010 0.1398222947 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000039_190 0.1574042276 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_001544_060 0.1614194829 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
9 Hb_000500_360 0.1655643983 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
10 Hb_003453_060 0.1679110994 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
11 Hb_000252_240 0.1694213264 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
12 Hb_000300_070 0.1721698269 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
13 Hb_001898_100 0.1749941988 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
14 Hb_007850_100 0.1772724006 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
15 Hb_000445_310 0.1792287532 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
16 Hb_005575_010 0.1798070578 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
17 Hb_005831_010 0.1800307498 - - hypothetical protein JCGZ_04003 [Jatropha curcas]
18 Hb_001501_020 0.1831980065 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
19 Hb_000020_020 0.1901401193 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
20 Hb_078582_010 0.1940653746 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]

Gene co-expression network

sample Hb_003050_010 Hb_003050_010 Hb_001285_020 Hb_001285_020 Hb_003050_010--Hb_001285_020 Hb_002025_290 Hb_002025_290 Hb_003050_010--Hb_002025_290 Hb_000987_160 Hb_000987_160 Hb_003050_010--Hb_000987_160 Hb_000334_160 Hb_000334_160 Hb_003050_010--Hb_000334_160 Hb_009102_010 Hb_009102_010 Hb_003050_010--Hb_009102_010 Hb_000039_190 Hb_000039_190 Hb_003050_010--Hb_000039_190 Hb_001285_020--Hb_002025_290 Hb_001285_020--Hb_009102_010 Hb_005575_010 Hb_005575_010 Hb_001285_020--Hb_005575_010 Hb_003453_060 Hb_003453_060 Hb_001285_020--Hb_003453_060 Hb_000500_360 Hb_000500_360 Hb_001285_020--Hb_000500_360 Hb_002025_290--Hb_003453_060 Hb_002025_290--Hb_005575_010 Hb_002025_290--Hb_009102_010 Hb_001544_060 Hb_001544_060 Hb_002025_290--Hb_001544_060 Hb_006356_010 Hb_006356_010 Hb_000987_160--Hb_006356_010 Hb_000987_160--Hb_000334_160 Hb_000987_160--Hb_000039_190 Hb_000987_160--Hb_001285_020 Hb_089568_010 Hb_089568_010 Hb_000987_160--Hb_089568_010 Hb_000334_160--Hb_000039_190 Hb_004554_010 Hb_004554_010 Hb_000334_160--Hb_004554_010 Hb_000300_070 Hb_000300_070 Hb_000334_160--Hb_000300_070 Hb_000334_160--Hb_001285_020 Hb_000260_750 Hb_000260_750 Hb_009102_010--Hb_000260_750 Hb_009102_010--Hb_000500_360 Hb_000880_040 Hb_000880_040 Hb_009102_010--Hb_000880_040 Hb_078582_010 Hb_078582_010 Hb_009102_010--Hb_078582_010 Hb_001040_090 Hb_001040_090 Hb_000039_190--Hb_001040_090 Hb_090889_010 Hb_090889_010 Hb_000039_190--Hb_090889_010 Hb_094439_010 Hb_094439_010 Hb_000039_190--Hb_094439_010 Hb_003062_020 Hb_003062_020 Hb_000039_190--Hb_003062_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.28612 6.38533 0.26919 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.35205 4.09531

CAGE analysis