Hb_003050_040

Information

Type desease resistance
Description Gene Name: AAA
Location Contig3050: 25559-32499
Sequence    

Annotation

kegg
ID rcu:RCOM_0632640
description Katanin p60 ATPase-containing subunit, putative (EC:3.6.4.3)
nr
ID XP_002519683.1
description Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
swissprot
ID Q8IYT4
description Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3
trembl
ID B9S114
description Katanin p60 ATPase-containing subunit, putative OS=Ricinus communis GN=RCOM_0632640 PE=4 SV=1
Gene Ontology
ID GO:0005524
description katanin p60 atpase-containing subunit a-like 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32118: 25682-32362 , PASA_asmbl_32119: 25682-32299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_040 0.0 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
2 Hb_033491_010 0.089592056 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
3 Hb_005941_010 0.0901990938 - - PREDICTED: protein SAND [Jatropha curcas]
4 Hb_004242_100 0.0961843906 - - RNA binding protein, putative [Ricinus communis]
5 Hb_003352_050 0.0991419002 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
6 Hb_005245_090 0.0993254473 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
7 Hb_002942_030 0.1019542455 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
8 Hb_000028_050 0.1027618541 - - aldose-1-epimerase, putative [Ricinus communis]
9 Hb_000179_250 0.1030796279 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
10 Hb_017434_090 0.1040305109 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000176_140 0.1043223561 - - PREDICTED: bystin [Jatropha curcas]
12 Hb_098709_010 0.1049303701 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
13 Hb_000732_260 0.1067950241 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
14 Hb_002014_080 0.1073117479 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
15 Hb_001433_170 0.107363864 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
16 Hb_001369_060 0.1080857275 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
17 Hb_000085_280 0.1082699676 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
18 Hb_003453_010 0.1084506282 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000272_100 0.1093555204 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
20 Hb_000186_010 0.1095786028 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003050_040 Hb_003050_040 Hb_033491_010 Hb_033491_010 Hb_003050_040--Hb_033491_010 Hb_005941_010 Hb_005941_010 Hb_003050_040--Hb_005941_010 Hb_004242_100 Hb_004242_100 Hb_003050_040--Hb_004242_100 Hb_003352_050 Hb_003352_050 Hb_003050_040--Hb_003352_050 Hb_005245_090 Hb_005245_090 Hb_003050_040--Hb_005245_090 Hb_002942_030 Hb_002942_030 Hb_003050_040--Hb_002942_030 Hb_001369_060 Hb_001369_060 Hb_033491_010--Hb_001369_060 Hb_000732_260 Hb_000732_260 Hb_033491_010--Hb_000732_260 Hb_000272_100 Hb_000272_100 Hb_033491_010--Hb_000272_100 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_000784_090 Hb_000784_090 Hb_033491_010--Hb_000784_090 Hb_002215_050 Hb_002215_050 Hb_033491_010--Hb_002215_050 Hb_000152_140 Hb_000152_140 Hb_005941_010--Hb_000152_140 Hb_005941_010--Hb_005245_090 Hb_005941_010--Hb_004242_100 Hb_000696_110 Hb_000696_110 Hb_005941_010--Hb_000696_110 Hb_000984_190 Hb_000984_190 Hb_005941_010--Hb_000984_190 Hb_004072_010 Hb_004072_010 Hb_004242_100--Hb_004072_010 Hb_004242_100--Hb_005245_090 Hb_002263_010 Hb_002263_010 Hb_004242_100--Hb_002263_010 Hb_000705_260 Hb_000705_260 Hb_004242_100--Hb_000705_260 Hb_000176_110 Hb_000176_110 Hb_003352_050--Hb_000176_110 Hb_002377_040 Hb_002377_040 Hb_003352_050--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_003352_050--Hb_005754_020 Hb_002044_090 Hb_002044_090 Hb_003352_050--Hb_002044_090 Hb_000684_180 Hb_000684_180 Hb_003352_050--Hb_000684_180 Hb_000062_230 Hb_000062_230 Hb_003352_050--Hb_000062_230 Hb_000771_140 Hb_000771_140 Hb_005245_090--Hb_000771_140 Hb_098709_010 Hb_098709_010 Hb_005245_090--Hb_098709_010 Hb_026048_090 Hb_026048_090 Hb_005245_090--Hb_026048_090 Hb_009510_030 Hb_009510_030 Hb_005245_090--Hb_009510_030 Hb_001504_170 Hb_001504_170 Hb_002942_030--Hb_001504_170 Hb_013479_020 Hb_013479_020 Hb_002942_030--Hb_013479_020 Hb_004852_020 Hb_004852_020 Hb_002942_030--Hb_004852_020 Hb_002942_030--Hb_026048_090 Hb_000175_520 Hb_000175_520 Hb_002942_030--Hb_000175_520 Hb_001433_170 Hb_001433_170 Hb_002942_030--Hb_001433_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.6483 10.3938 5.61423 8.20441 66.4152 76.42
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.5637 27.2353 36.5515 16.8169 4.90056

CAGE analysis