Hb_003050_070

Information

Type -
Description -
Location Contig3050: 92844-93284
Sequence    

Annotation

kegg
ID rcu:RCOM_0632890
description hypothetical protein
nr
ID XP_002519688.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S119
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0632890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32123: 92782-93634
cDNA
(Sanger)
(ID:Location)		 011_P15.ab1: 92782-93543 , 014_F12.ab1: 92782-93469 , 016_J09.ab1: 92782-93427 , 025_G22.ab1: 92782-93390 , 033_D23.ab1: 92788-93257

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000714_010 0.1105692609 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
3 Hb_003211_050 0.1185908945 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
4 Hb_000567_280 0.1234484713 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
5 Hb_104010_010 0.1342467871 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
6 Hb_010166_020 0.1369397813 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
7 Hb_149683_010 0.1407366184 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
8 Hb_001507_070 0.1413118026 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001741_090 0.1447287067 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
10 Hb_000235_010 0.1462185879 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
11 Hb_002260_020 0.1466832707 - - -
12 Hb_003777_230 0.1469784442 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
13 Hb_000803_050 0.1504528753 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
14 Hb_159191_010 0.1570230484 - - protease inhibitor protein [Hevea brasiliensis]
15 Hb_000250_010 0.1577426019 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_000453_300 0.1583293619 - - latex cystatin [Hevea brasiliensis]
17 Hb_007741_040 0.1583364144 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
18 Hb_011004_010 0.1584424046 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
19 Hb_000300_400 0.1588215602 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
20 Hb_003371_100 0.1617161271 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003050_070 Hb_003050_070 Hb_000714_010 Hb_000714_010 Hb_003050_070--Hb_000714_010 Hb_003211_050 Hb_003211_050 Hb_003050_070--Hb_003211_050 Hb_000567_280 Hb_000567_280 Hb_003050_070--Hb_000567_280 Hb_104010_010 Hb_104010_010 Hb_003050_070--Hb_104010_010 Hb_010166_020 Hb_010166_020 Hb_003050_070--Hb_010166_020 Hb_149683_010 Hb_149683_010 Hb_003050_070--Hb_149683_010 Hb_000250_010 Hb_000250_010 Hb_000714_010--Hb_000250_010 Hb_000714_010--Hb_003211_050 Hb_000714_010--Hb_010166_020 Hb_003777_230 Hb_003777_230 Hb_000714_010--Hb_003777_230 Hb_000714_010--Hb_149683_010 Hb_001276_060 Hb_001276_060 Hb_003211_050--Hb_001276_060 Hb_011671_400 Hb_011671_400 Hb_003211_050--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003211_050--Hb_072912_020 Hb_003095_070 Hb_003095_070 Hb_003211_050--Hb_003095_070 Hb_159191_010 Hb_159191_010 Hb_000567_280--Hb_159191_010 Hb_000567_280--Hb_104010_010 Hb_000091_100 Hb_000091_100 Hb_000567_280--Hb_000091_100 Hb_001741_090 Hb_001741_090 Hb_000567_280--Hb_001741_090 Hb_002835_220 Hb_002835_220 Hb_000567_280--Hb_002835_220 Hb_104010_010--Hb_001741_090 Hb_001507_070 Hb_001507_070 Hb_104010_010--Hb_001507_070 Hb_000453_300 Hb_000453_300 Hb_104010_010--Hb_000453_300 Hb_148121_010 Hb_148121_010 Hb_104010_010--Hb_148121_010 Hb_011004_010 Hb_011004_010 Hb_104010_010--Hb_011004_010 Hb_001266_050 Hb_001266_050 Hb_010166_020--Hb_001266_050 Hb_002492_020 Hb_002492_020 Hb_010166_020--Hb_002492_020 Hb_001198_030 Hb_001198_030 Hb_010166_020--Hb_001198_030 Hb_000052_010 Hb_000052_010 Hb_010166_020--Hb_000052_010 Hb_000526_020 Hb_000526_020 Hb_010166_020--Hb_000526_020 Hb_007741_040 Hb_007741_040 Hb_010166_020--Hb_007741_040 Hb_006816_440 Hb_006816_440 Hb_149683_010--Hb_006816_440 Hb_002235_230 Hb_002235_230 Hb_149683_010--Hb_002235_230 Hb_000184_180 Hb_000184_180 Hb_149683_010--Hb_000184_180 Hb_149683_010--Hb_000052_010 Hb_103752_010 Hb_103752_010 Hb_149683_010--Hb_103752_010 Hb_000300_400 Hb_000300_400 Hb_149683_010--Hb_000300_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
884.847 42.6615 83.2025 122.076 274.702 367.941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4331.28 2975.42 1351.7 144.975 60.124

CAGE analysis