Hb_003050_080

Information

Type -
Description -
Location Contig3050: 94293-100541
Sequence    

Annotation

kegg
ID rcu:RCOM_0632900
description 40S ribosomal protein S14, putative
nr
ID XP_002519689.1
description 40S ribosomal protein S14, putative [Ricinus communis]
swissprot
ID P19951
description 40S ribosomal protein S14 OS=Zea mays PE=3 SV=1
trembl
ID B9S120
description 40S ribosomal protein S14, putative OS=Ricinus communis GN=RCOM_0632900 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32124: 94369-101232 , PASA_asmbl_32129: 98398-98707
cDNA
(Sanger)
(ID:Location)		 003_O15.ab1: 94387-101124 , 040_L24.ab1: 94387-101124 , 049_H21.ab1: 94387-101131 , 052_K01.ab1: 94388-101124

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_080 0.0 - - 40S ribosomal protein S14, putative [Ricinus communis]
2 Hb_063716_050 0.0501520629 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
3 Hb_002686_020 0.0523411966 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
4 Hb_000832_140 0.0554756231 - - actin depolymerizing factor 4 [Hevea brasiliensis]
5 Hb_001489_060 0.0565819946 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
6 Hb_001540_010 0.0569994415 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
7 Hb_000056_200 0.0572936457 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
8 Hb_008878_030 0.0609688686 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
9 Hb_002214_040 0.0619374832 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_005993_040 0.0656752872 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
11 Hb_002226_070 0.0666575752 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
12 Hb_000926_250 0.0668411289 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
13 Hb_002006_020 0.066938791 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
14 Hb_001821_010 0.0676358686 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
15 Hb_000103_560 0.0698567536 - - ADP-ribosylation factor, putative [Ricinus communis]
16 Hb_001604_080 0.071825375 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
17 Hb_000007_100 0.0741250852 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
18 Hb_010921_010 0.0763066658 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
19 Hb_002928_130 0.0767229776 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
20 Hb_011360_140 0.0776841285 - - 40S ribosomal protein S19, putative [Ricinus communis]

Gene co-expression network

sample Hb_003050_080 Hb_003050_080 Hb_063716_050 Hb_063716_050 Hb_003050_080--Hb_063716_050 Hb_002686_020 Hb_002686_020 Hb_003050_080--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_003050_080--Hb_000832_140 Hb_001489_060 Hb_001489_060 Hb_003050_080--Hb_001489_060 Hb_001540_010 Hb_001540_010 Hb_003050_080--Hb_001540_010 Hb_000056_200 Hb_000056_200 Hb_003050_080--Hb_000056_200 Hb_000103_560 Hb_000103_560 Hb_063716_050--Hb_000103_560 Hb_063716_050--Hb_001489_060 Hb_000529_190 Hb_000529_190 Hb_063716_050--Hb_000529_190 Hb_063716_050--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_063716_050--Hb_001604_080 Hb_008878_030 Hb_008878_030 Hb_002686_020--Hb_008878_030 Hb_002686_020--Hb_001540_010 Hb_000331_080 Hb_000331_080 Hb_002686_020--Hb_000331_080 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030 Hb_000174_090 Hb_000174_090 Hb_000832_140--Hb_000174_090 Hb_002214_040 Hb_002214_040 Hb_000832_140--Hb_002214_040 Hb_000832_140--Hb_000103_560 Hb_000832_140--Hb_000529_190 Hb_002226_070 Hb_002226_070 Hb_001489_060--Hb_002226_070 Hb_002006_020 Hb_002006_020 Hb_001489_060--Hb_002006_020 Hb_001489_060--Hb_001821_010 Hb_001489_060--Hb_000056_200 Hb_001540_010--Hb_008878_030 Hb_004931_090 Hb_004931_090 Hb_001540_010--Hb_004931_090 Hb_005993_040 Hb_005993_040 Hb_001540_010--Hb_005993_040 Hb_000970_010 Hb_000970_010 Hb_001540_010--Hb_000970_010 Hb_000056_200--Hb_001821_010 Hb_000920_180 Hb_000920_180 Hb_000056_200--Hb_000920_180 Hb_000243_030 Hb_000243_030 Hb_000056_200--Hb_000243_030 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.355 33.6496 53.3732 42.538 97.6909 106.016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.935 187.653 98.7744 54.7958 36.7849

CAGE analysis