Hb_003050_100

Information

Type -
Description -
Location Contig3050: 108506-113056
Sequence    

Annotation

kegg
ID rcu:RCOM_0632910
description hypothetical protein
nr
ID XP_012072100.1
description PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04611 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32126: 108521-112993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_100 0.0 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
2 Hb_002592_050 0.0966830171 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
3 Hb_032208_050 0.1348725244 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
4 Hb_001178_090 0.1390250249 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
5 Hb_005839_030 0.1440214854 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
6 Hb_000032_430 0.1476666144 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001564_090 0.1670446679 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000749_160 0.1686308692 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_034280_010 0.1689133013 - - Protein bem46, putative [Ricinus communis]
10 Hb_002681_120 0.1730233495 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
11 Hb_003647_040 0.1737370597 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002025_050 0.1756255249 - - conserved hypothetical protein [Ricinus communis]
13 Hb_139461_010 0.1767042947 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
14 Hb_000956_070 0.1771347849 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
15 Hb_179960_010 0.1779768322 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
16 Hb_000203_070 0.179290484 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
17 Hb_001663_120 0.1820003595 - - PREDICTED: formin-like protein 1 isoform X1 [Jatropha curcas]
18 Hb_009838_120 0.1840760256 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
19 Hb_000127_080 0.1851372958 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
20 Hb_004079_100 0.1858223947 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]

Gene co-expression network

sample Hb_003050_100 Hb_003050_100 Hb_002592_050 Hb_002592_050 Hb_003050_100--Hb_002592_050 Hb_032208_050 Hb_032208_050 Hb_003050_100--Hb_032208_050 Hb_001178_090 Hb_001178_090 Hb_003050_100--Hb_001178_090 Hb_005839_030 Hb_005839_030 Hb_003050_100--Hb_005839_030 Hb_000032_430 Hb_000032_430 Hb_003050_100--Hb_000032_430 Hb_001564_090 Hb_001564_090 Hb_003050_100--Hb_001564_090 Hb_002592_050--Hb_005839_030 Hb_002592_050--Hb_032208_050 Hb_155444_010 Hb_155444_010 Hb_002592_050--Hb_155444_010 Hb_002025_050 Hb_002025_050 Hb_002592_050--Hb_002025_050 Hb_002592_050--Hb_001178_090 Hb_034280_010 Hb_034280_010 Hb_032208_050--Hb_034280_010 Hb_005694_180 Hb_005694_180 Hb_032208_050--Hb_005694_180 Hb_032208_050--Hb_001178_090 Hb_003647_040 Hb_003647_040 Hb_032208_050--Hb_003647_040 Hb_179960_010 Hb_179960_010 Hb_001178_090--Hb_179960_010 Hb_001178_090--Hb_000032_430 Hb_000203_070 Hb_000203_070 Hb_001178_090--Hb_000203_070 Hb_012395_050 Hb_012395_050 Hb_001178_090--Hb_012395_050 Hb_000696_030 Hb_000696_030 Hb_005839_030--Hb_000696_030 Hb_001157_190 Hb_001157_190 Hb_005839_030--Hb_001157_190 Hb_005144_080 Hb_005144_080 Hb_005839_030--Hb_005144_080 Hb_011129_020 Hb_011129_020 Hb_005839_030--Hb_011129_020 Hb_004079_100 Hb_004079_100 Hb_005839_030--Hb_004079_100 Hb_160405_010 Hb_160405_010 Hb_000032_430--Hb_160405_010 Hb_000032_430--Hb_003647_040 Hb_002749_040 Hb_002749_040 Hb_000032_430--Hb_002749_040 Hb_002539_050 Hb_002539_050 Hb_000032_430--Hb_002539_050 Hb_001663_120 Hb_001663_120 Hb_001564_090--Hb_001663_120 Hb_029866_080 Hb_029866_080 Hb_001564_090--Hb_029866_080 Hb_005333_120 Hb_005333_120 Hb_001564_090--Hb_005333_120 Hb_012787_050 Hb_012787_050 Hb_001564_090--Hb_012787_050 Hb_004462_040 Hb_004462_040 Hb_001564_090--Hb_004462_040 Hb_001799_090 Hb_001799_090 Hb_001564_090--Hb_001799_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74638 9.95932 15.2034 51.0673 1.90672 5.19102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.339095 0.388039 0.27351 34.9222 8.78168

CAGE analysis