Hb_003050_200

Information

Type -
Description -
Location Contig3050: 187717-191068
Sequence    

Annotation

kegg
ID tcc:TCM_001988
description Ribosomal protein L18ae/LX family protein
nr
ID XP_007048983.1
description Ribosomal protein L18ae/LX family protein [Theobroma cacao]
swissprot
ID Q9ATF5
description 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1
trembl
ID A0A061DKF5
description 60S ribosomal protein L18a OS=Theobroma cacao GN=TCM_001988 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l18a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32146: 187687-190883 , PASA_asmbl_32148: 189139-189362
cDNA
(Sanger)
(ID:Location)		 003_N18.ab1: 187687-190848 , 013_H01.ab1: 187687-190842 , 015_D08.ab1: 187687-190774 , 020_K13.ab1: 187689-190762 , 030_E18.ab1: 190674-190827 , 043_M10.ab1: 187687-190769 , 047_C21.ab1: 187689-190855

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_200 0.0 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
2 Hb_002918_210 0.0649342595 - - PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]
3 Hb_011224_060 0.0732826233 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
4 Hb_000808_250 0.0789997605 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
5 Hb_105386_010 0.0839357097 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
6 Hb_011970_030 0.0882104034 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
7 Hb_004363_010 0.0891647227 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
8 Hb_000072_140 0.0920353499 - - -
9 Hb_003292_040 0.0920916371 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
10 Hb_002192_080 0.0924491673 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
11 Hb_001047_100 0.0982935971 - - 40S ribosomal protein S18, putative [Ricinus communis]
12 Hb_000959_270 0.0993181976 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
13 Hb_006623_020 0.0994733622 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
14 Hb_004093_090 0.1000760082 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
15 Hb_106552_050 0.1009217996 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
16 Hb_000261_250 0.1023068311 - - elongation factor 1-alpha [Lepidium sativum]
17 Hb_097783_020 0.1026417015 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
18 Hb_001142_050 0.1028474613 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
19 Hb_012022_160 0.1029650146 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
20 Hb_011848_010 0.1033823956 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]

Gene co-expression network

sample Hb_003050_200 Hb_003050_200 Hb_002918_210 Hb_002918_210 Hb_003050_200--Hb_002918_210 Hb_011224_060 Hb_011224_060 Hb_003050_200--Hb_011224_060 Hb_000808_250 Hb_000808_250 Hb_003050_200--Hb_000808_250 Hb_105386_010 Hb_105386_010 Hb_003050_200--Hb_105386_010 Hb_011970_030 Hb_011970_030 Hb_003050_200--Hb_011970_030 Hb_004363_010 Hb_004363_010 Hb_003050_200--Hb_004363_010 Hb_002918_210--Hb_000808_250 Hb_003292_040 Hb_003292_040 Hb_002918_210--Hb_003292_040 Hb_001348_070 Hb_001348_070 Hb_002918_210--Hb_001348_070 Hb_001564_130 Hb_001564_130 Hb_002918_210--Hb_001564_130 Hb_000663_040 Hb_000663_040 Hb_002918_210--Hb_000663_040 Hb_004032_430 Hb_004032_430 Hb_011224_060--Hb_004032_430 Hb_011224_060--Hb_003292_040 Hb_011224_060--Hb_011970_030 Hb_097783_020 Hb_097783_020 Hb_011224_060--Hb_097783_020 Hb_003935_020 Hb_003935_020 Hb_011224_060--Hb_003935_020 Hb_006623_020 Hb_006623_020 Hb_000808_250--Hb_006623_020 Hb_003849_060 Hb_003849_060 Hb_000808_250--Hb_003849_060 Hb_021422_010 Hb_021422_010 Hb_000808_250--Hb_021422_010 Hb_000359_330 Hb_000359_330 Hb_000808_250--Hb_000359_330 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_106552_050 Hb_106552_050 Hb_000808_250--Hb_106552_050 Hb_001047_100 Hb_001047_100 Hb_105386_010--Hb_001047_100 Hb_001358_030 Hb_001358_030 Hb_105386_010--Hb_001358_030 Hb_000189_340 Hb_000189_340 Hb_105386_010--Hb_000189_340 Hb_000349_060 Hb_000349_060 Hb_105386_010--Hb_000349_060 Hb_023001_050 Hb_023001_050 Hb_105386_010--Hb_023001_050 Hb_003746_040 Hb_003746_040 Hb_105386_010--Hb_003746_040 Hb_011970_030--Hb_003292_040 Hb_002233_150 Hb_002233_150 Hb_011970_030--Hb_002233_150 Hb_005618_160 Hb_005618_160 Hb_011970_030--Hb_005618_160 Hb_000640_240 Hb_000640_240 Hb_011970_030--Hb_000640_240 Hb_001454_400 Hb_001454_400 Hb_011970_030--Hb_001454_400 Hb_011970_030--Hb_001564_130 Hb_002292_010 Hb_002292_010 Hb_004363_010--Hb_002292_010 Hb_000976_260 Hb_000976_260 Hb_004363_010--Hb_000976_260 Hb_008112_040 Hb_008112_040 Hb_004363_010--Hb_008112_040 Hb_007441_210 Hb_007441_210 Hb_004363_010--Hb_007441_210 Hb_007007_050 Hb_007007_050 Hb_004363_010--Hb_007007_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
368.012 163.883 265.031 185.505 407.075 372.569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
162.865 433.457 181.163 107.157 89.0295

CAGE analysis