Hb_003050_230

Information

Type -
Description -
Location Contig3050: 203205-203938
Sequence    

Annotation

kegg
ID rcu:RCOM_0633250
description hypothetical protein
nr
ID XP_002519702.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S133
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0633250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_084849_020 0.0733556846 - - ARF GTPase activator, putative [Ricinus communis]
3 Hb_001369_050 0.0859262165 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
4 Hb_005686_110 0.0920606583 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
5 Hb_001437_220 0.0942703597 - - Transmembrane protein, putative [Ricinus communis]
6 Hb_092100_020 0.0957309813 - - strictosidine synthase, putative [Ricinus communis]
7 Hb_000061_330 0.0966689648 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
8 Hb_002235_400 0.0976600794 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
9 Hb_003052_100 0.1005555211 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_004657_020 0.1013545506 - - rer1 protein, putative [Ricinus communis]
11 Hb_000086_570 0.1019198878 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
12 Hb_000333_090 0.1028050927 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
13 Hb_001711_030 0.1054644785 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
14 Hb_002078_450 0.1058633754 - - nuclear transport factor, putative [Ricinus communis]
15 Hb_002214_050 0.1066364843 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
16 Hb_071736_020 0.1070358999 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
17 Hb_000362_210 0.1074103555 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
18 Hb_023226_090 0.1080144316 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
19 Hb_002411_200 0.1092604828 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002447_030 0.1101565938 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]

Gene co-expression network

sample Hb_003050_230 Hb_003050_230 Hb_084849_020 Hb_084849_020 Hb_003050_230--Hb_084849_020 Hb_001369_050 Hb_001369_050 Hb_003050_230--Hb_001369_050 Hb_005686_110 Hb_005686_110 Hb_003050_230--Hb_005686_110 Hb_001437_220 Hb_001437_220 Hb_003050_230--Hb_001437_220 Hb_092100_020 Hb_092100_020 Hb_003050_230--Hb_092100_020 Hb_000061_330 Hb_000061_330 Hb_003050_230--Hb_000061_330 Hb_084849_020--Hb_001369_050 Hb_001718_100 Hb_001718_100 Hb_084849_020--Hb_001718_100 Hb_084849_020--Hb_005686_110 Hb_001427_120 Hb_001427_120 Hb_084849_020--Hb_001427_120 Hb_000362_210 Hb_000362_210 Hb_084849_020--Hb_000362_210 Hb_001369_050--Hb_005686_110 Hb_001235_070 Hb_001235_070 Hb_001369_050--Hb_001235_070 Hb_001369_050--Hb_001718_100 Hb_001369_050--Hb_092100_020 Hb_000371_080 Hb_000371_080 Hb_005686_110--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_005686_110--Hb_002078_450 Hb_022250_040 Hb_022250_040 Hb_005686_110--Hb_022250_040 Hb_005686_110--Hb_001235_070 Hb_009711_030 Hb_009711_030 Hb_005686_110--Hb_009711_030 Hb_002214_050 Hb_002214_050 Hb_001437_220--Hb_002214_050 Hb_000120_750 Hb_000120_750 Hb_001437_220--Hb_000120_750 Hb_000045_190 Hb_000045_190 Hb_001437_220--Hb_000045_190 Hb_010172_030 Hb_010172_030 Hb_001437_220--Hb_010172_030 Hb_000333_090 Hb_000333_090 Hb_001437_220--Hb_000333_090 Hb_023226_090 Hb_023226_090 Hb_092100_020--Hb_023226_090 Hb_157022_020 Hb_157022_020 Hb_092100_020--Hb_157022_020 Hb_092100_020--Hb_084849_020 Hb_117134_010 Hb_117134_010 Hb_092100_020--Hb_117134_010 Hb_010883_150 Hb_010883_150 Hb_000061_330--Hb_010883_150 Hb_000061_330--Hb_005686_110 Hb_011931_050 Hb_011931_050 Hb_000061_330--Hb_011931_050 Hb_000479_180 Hb_000479_180 Hb_000061_330--Hb_000479_180 Hb_001584_070 Hb_001584_070 Hb_000061_330--Hb_001584_070 Hb_000634_050 Hb_000634_050 Hb_000061_330--Hb_000634_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1005 2.08451 0.701948 4.24476 4.69649 10.3518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.792 12.3478 9.42577 2.43426 1.44933

CAGE analysis