Hb_003050_240

Information

Type -
Description -
Location Contig3050: 205683-205995
Sequence    

Annotation

kegg
ID rcu:RCOM_0633270
description hypothetical protein
nr
ID XP_002519704.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S135
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0633270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000579_160 0.0667748217 - - PREDICTED: uncharacterized protein LOC104216549 isoform X1 [Nicotiana sylvestris]
3 Hb_036693_020 0.0992859532 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
4 Hb_109187_010 0.1288434213 - - PREDICTED: serine/threonine-protein kinase CDL1 [Cucumis sativus]
5 Hb_000589_080 0.1698381831 - - hypothetical protein CICLE_v10032537mg [Citrus clementina]
6 Hb_063907_010 0.1821808292 - - -
7 Hb_000164_210 0.1944343195 - - glutaredoxin-1, grx1, putative [Ricinus communis]
8 Hb_003906_040 0.2019636121 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like [Tarenaya hassleriana]
9 Hb_001341_140 0.2146059136 - - -
10 Hb_178343_010 0.2184692878 - - PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]
11 Hb_003902_080 0.2320467238 - - PREDICTED: senescence-specific cysteine protease SAG39-like [Populus euphratica]
12 Hb_003988_020 0.2431993176 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
13 Hb_000042_120 0.2463873035 - - PREDICTED: uncharacterized protein LOC105632800 [Jatropha curcas]
14 Hb_003092_010 0.2607817078 - - hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
15 Hb_001396_270 0.2640746831 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
16 Hb_001741_110 0.2651520572 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
17 Hb_012640_010 0.27156875 - - -
18 Hb_000002_190 0.2720939107 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
19 Hb_000003_520 0.2720939107 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
20 Hb_000005_170 0.2720939107 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]

Gene co-expression network

sample Hb_003050_240 Hb_003050_240 Hb_000579_160 Hb_000579_160 Hb_003050_240--Hb_000579_160 Hb_036693_020 Hb_036693_020 Hb_003050_240--Hb_036693_020 Hb_109187_010 Hb_109187_010 Hb_003050_240--Hb_109187_010 Hb_000589_080 Hb_000589_080 Hb_003050_240--Hb_000589_080 Hb_063907_010 Hb_063907_010 Hb_003050_240--Hb_063907_010 Hb_000164_210 Hb_000164_210 Hb_003050_240--Hb_000164_210 Hb_000579_160--Hb_109187_010 Hb_000579_160--Hb_000589_080 Hb_003906_040 Hb_003906_040 Hb_000579_160--Hb_003906_040 Hb_000579_160--Hb_036693_020 Hb_178343_010 Hb_178343_010 Hb_000579_160--Hb_178343_010 Hb_003902_080 Hb_003902_080 Hb_036693_020--Hb_003902_080 Hb_036693_020--Hb_063907_010 Hb_001341_140 Hb_001341_140 Hb_036693_020--Hb_001341_140 Hb_036693_020--Hb_109187_010 Hb_109187_010--Hb_000589_080 Hb_109187_010--Hb_003906_040 Hb_109187_010--Hb_178343_010 Hb_003092_010 Hb_003092_010 Hb_109187_010--Hb_003092_010 Hb_000589_080--Hb_003092_010 Hb_000002_190 Hb_000002_190 Hb_000589_080--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_000589_080--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_000589_080--Hb_000005_170 Hb_063907_010--Hb_000579_160 Hb_063907_010--Hb_003902_080 Hb_011381_090 Hb_011381_090 Hb_063907_010--Hb_011381_090 Hb_063907_010--Hb_109187_010 Hb_003988_020 Hb_003988_020 Hb_000164_210--Hb_003988_020 Hb_000164_210--Hb_000579_160 Hb_000164_210--Hb_109187_010 Hb_041188_010 Hb_041188_010 Hb_000164_210--Hb_041188_010 Hb_025526_110 Hb_025526_110 Hb_000164_210--Hb_025526_110 Hb_000164_210--Hb_000589_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.576511 0 0 3.52926 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis