Hb_003050_270

Information

Type -
Description -
Location Contig3050: 215685-221292
Sequence    

Annotation

kegg
ID rcu:RCOM_0633300
description 50 kDa ketoavyl-ACP synthase (EC:2.3.1.41)
nr
ID XP_012072087.1
description PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic [Jatropha curcas]
swissprot
ID P52410
description 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=2 SV=2
trembl
ID A0A067KSG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04596 PE=3 SV=1
Gene Ontology
ID GO:0004315
description 3-oxoacyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32158: 215783-221249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_270 0.0 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic [Jatropha curcas]
2 Hb_000521_080 0.090954409 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
3 Hb_000640_170 0.0996418177 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
4 Hb_001922_170 0.0998004303 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
5 Hb_000035_500 0.1024594519 - - PREDICTED: ADP-ribosylation factor 1 isoform X2 [Tarenaya hassleriana]
6 Hb_073973_100 0.1028240853 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
7 Hb_042729_020 0.1028751513 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
8 Hb_006570_140 0.1038327609 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
9 Hb_002728_070 0.1046069325 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
10 Hb_003994_290 0.104674472 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
11 Hb_005357_160 0.1057889865 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
12 Hb_032808_010 0.1070874862 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
13 Hb_003376_330 0.1097317896 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
14 Hb_000381_120 0.1120760581 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
15 Hb_000638_120 0.1139538105 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
16 Hb_000025_470 0.114246283 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
17 Hb_063716_100 0.1146042723 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
18 Hb_002205_210 0.1146573303 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 [Jatropha curcas]
19 Hb_000331_180 0.1146893899 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640220 [Jatropha curcas]
20 Hb_168978_030 0.1147586451 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_003050_270 Hb_003050_270 Hb_000521_080 Hb_000521_080 Hb_003050_270--Hb_000521_080 Hb_000640_170 Hb_000640_170 Hb_003050_270--Hb_000640_170 Hb_001922_170 Hb_001922_170 Hb_003050_270--Hb_001922_170 Hb_000035_500 Hb_000035_500 Hb_003050_270--Hb_000035_500 Hb_073973_100 Hb_073973_100 Hb_003050_270--Hb_073973_100 Hb_042729_020 Hb_042729_020 Hb_003050_270--Hb_042729_020 Hb_002141_030 Hb_002141_030 Hb_000521_080--Hb_002141_030 Hb_062135_030 Hb_062135_030 Hb_000521_080--Hb_062135_030 Hb_000212_330 Hb_000212_330 Hb_000521_080--Hb_000212_330 Hb_000094_300 Hb_000094_300 Hb_000521_080--Hb_000094_300 Hb_005054_230 Hb_005054_230 Hb_000521_080--Hb_005054_230 Hb_002728_070 Hb_002728_070 Hb_000521_080--Hb_002728_070 Hb_168978_030 Hb_168978_030 Hb_000640_170--Hb_168978_030 Hb_000035_470 Hb_000035_470 Hb_000640_170--Hb_000035_470 Hb_001599_040 Hb_001599_040 Hb_000640_170--Hb_001599_040 Hb_009898_050 Hb_009898_050 Hb_000640_170--Hb_009898_050 Hb_000156_010 Hb_000156_010 Hb_000640_170--Hb_000156_010 Hb_026198_070 Hb_026198_070 Hb_000640_170--Hb_026198_070 Hb_054865_120 Hb_054865_120 Hb_001922_170--Hb_054865_120 Hb_006570_140 Hb_006570_140 Hb_001922_170--Hb_006570_140 Hb_005847_060 Hb_005847_060 Hb_001922_170--Hb_005847_060 Hb_001579_270 Hb_001579_270 Hb_001922_170--Hb_001579_270 Hb_002820_050 Hb_002820_050 Hb_001922_170--Hb_002820_050 Hb_000094_330 Hb_000094_330 Hb_001922_170--Hb_000094_330 Hb_000245_220 Hb_000245_220 Hb_000035_500--Hb_000245_220 Hb_000035_500--Hb_006570_140 Hb_000035_500--Hb_001922_170 Hb_001268_240 Hb_001268_240 Hb_000035_500--Hb_001268_240 Hb_000731_160 Hb_000731_160 Hb_000035_500--Hb_000731_160 Hb_029879_010 Hb_029879_010 Hb_000035_500--Hb_029879_010 Hb_003376_330 Hb_003376_330 Hb_073973_100--Hb_003376_330 Hb_000270_490 Hb_000270_490 Hb_073973_100--Hb_000270_490 Hb_000556_120 Hb_000556_120 Hb_073973_100--Hb_000556_120 Hb_002000_080 Hb_002000_080 Hb_073973_100--Hb_002000_080 Hb_023732_030 Hb_023732_030 Hb_073973_100--Hb_023732_030 Hb_165928_030 Hb_165928_030 Hb_073973_100--Hb_165928_030 Hb_004070_020 Hb_004070_020 Hb_042729_020--Hb_004070_020 Hb_001348_170 Hb_001348_170 Hb_042729_020--Hb_001348_170 Hb_003994_290 Hb_003994_290 Hb_042729_020--Hb_003994_290 Hb_000331_180 Hb_000331_180 Hb_042729_020--Hb_000331_180 Hb_004837_270 Hb_004837_270 Hb_042729_020--Hb_004837_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.9325 12.073 31.0571 29.629 20.6495 31.8813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.961 27.7889 22.2048 44.102 29.9016

CAGE analysis